Suppr超能文献

从罕见的拷贝数变异到 ADHD 中的生物学过程。

From Rare Copy Number Variants to Biological Processes in ADHD.

机构信息

Department of Human Genetics (Harich, van der Voet, Klein, Fenckova, Schenck, Franke) and Department of Psychiatry (Franke), Donders Institute for Brain, Cognition, and Behavior, Radboud University Medical Center, Nijmegen, the Netherlands; and Center for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, the Netherlands (Čížek).

出版信息

Am J Psychiatry. 2020 Sep 1;177(9):855-866. doi: 10.1176/appi.ajp.2020.19090923. Epub 2020 Jun 30.

Abstract

OBJECTIVE

Attention deficit hyperactivity disorder (ADHD) is a highly heritable psychiatric disorder. The objective of this study was to define ADHD-associated candidate genes and their associated molecular modules and biological themes, based on the analysis of rare genetic variants.

METHODS

The authors combined data from 11 published copy number variation studies in 6,176 individuals with ADHD and 25,026 control subjects and prioritized genes by applying an integrative strategy based on criteria including recurrence in individuals with ADHD, absence in control subjects, complete coverage in copy number gains, and presence in the minimal region common to overlapping copy number variants (CNVs), as well as on protein-protein interactions and information from cross-species genotype-phenotype annotation.

RESULTS

The authors localized 2,241 eligible genes in the 1,532 reported CNVs, of which they classified 432 as high-priority ADHD candidate genes. The high-priority ADHD candidate genes were significantly coexpressed in the brain. A network of 66 genes was supported by ADHD-relevant phenotypes in the cross-species database. Four significantly interconnected protein modules were found among the high-priority ADHD genes. A total of 26 genes were observed across all applied bioinformatic methods. Lookup in the latest genome-wide association study for ADHD showed that among those 26 genes, and were also supported by common genetic variants.

CONCLUSIONS

Integration of a stringent filtering procedure in CNV studies with suitable bioinformatics approaches can identify ADHD candidate genes at increased levels of credibility. The authors' analytic pipeline provides additional insight into the molecular mechanisms underlying ADHD and allows prioritization of genes for functional validation in validated model organisms.

摘要

目的

注意缺陷多动障碍(ADHD)是一种高度遗传性精神障碍。本研究的目的是基于对罕见遗传变异的分析,定义与 ADHD 相关的候选基因及其相关的分子模块和生物学主题。

方法

作者结合了 11 项已发表的 ADHD 患者和 25026 名对照个体的拷贝数变异研究数据,通过应用一种综合策略来优先考虑基因,该策略的标准包括在 ADHD 个体中重复出现、在对照个体中缺失、在拷贝数增益中完全覆盖以及在重叠拷贝数变异(CNV)的最小共同区域中存在、以及蛋白质-蛋白质相互作用和跨物种基因型-表型注释的信息。

结果

作者在 1532 个报告的 CNV 中定位了 2241 个合格基因,其中他们将 432 个基因分类为 ADHD 的高优先级候选基因。高优先级 ADHD 候选基因在大脑中显著共表达。跨物种数据库中 ADHD 相关表型支持 66 个基因的网络。在高优先级 ADHD 基因中发现了四个显著相互连接的蛋白质模块。总共观察到 26 个基因跨越了所有应用的生物信息学方法。在 ADHD 的最新全基因组关联研究中查找显示,在这 26 个基因中,和 也被常见的遗传变异所支持。

结论

在 CNV 研究中结合严格的过滤程序和合适的生物信息学方法可以识别 ADHD 候选基因,从而提高可信度。作者的分析流程为 ADHD 的分子机制提供了更多的见解,并允许在经过验证的模式生物中对基因进行功能验证的优先级排序。

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验