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RNAWRE:一个关于RNA修饰的书写者、阅读者和擦除者的资源库。

RNAWRE: a resource of writers, readers and erasers of RNA modifications.

作者信息

Nie Fulei, Feng Pengmian, Song Xiaoming, Wu Meng, Tang Qiang, Chen Wei

机构信息

School of Life Sciences, Center for Genomics and Computational Biology, North China University of Science and Technology, 21 Bohai Road, Caofeidian Xincheng, Tangshan 063009, China.

School of Basic Medical Sciences, 1166 Liutai Avenue, Wenjiang District, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, China.

出版信息

Database (Oxford). 2020 Jan 1;2020. doi: 10.1093/database/baaa049.

Abstract

RNA modifications are involved in various kinds of cellular biological processes. Accumulated evidences have demonstrated that the functions of RNA modifications are determined by the effectors that can catalyze, recognize and remove RNA modifications. They are called 'writers', 'readers' and 'erasers'. The identification of RNA modification effectors will be helpful for understanding the regulatory mechanisms and biological functions of RNA modifications. In this work, we developed a database called RNAWRE that specially deposits RNA modification effectors. The current version of RNAWRE stored 2045 manually curated writers, readers and erasers for the six major kinds of RNA modifications, namely Cap, m1A, m6A, m5C, ψ and Poly A. The main modules of RNAWRE not only allow browsing and downloading the RNA modification effectors but also support the BLAST search of the potential RNA modification effectors in other species. We hope that RNAWRE will be helpful for the researches on RNA modifications. Database URL: http://rnawre.bio2db.com.

摘要

RNA修饰参与多种细胞生物学过程。越来越多的证据表明,RNA修饰的功能由能够催化、识别和去除RNA修饰的效应物决定。它们被称为“书写者”“阅读者”和“擦除者”。RNA修饰效应物的鉴定将有助于理解RNA修饰的调控机制和生物学功能。在这项工作中,我们开发了一个名为RNAWRE的数据库,专门存储RNA修饰效应物。RNAWRE的当前版本存储了2045个经过人工整理的针对六种主要RNA修饰(即帽结构、N1-甲基腺嘌呤、N6-甲基腺嘌呤、5-甲基胞嘧啶、假尿苷和多聚腺苷酸化)的书写者、阅读者和擦除者。RNAWRE的主要模块不仅允许浏览和下载RNA修饰效应物,还支持在其他物种中对潜在RNA修饰效应物进行BLAST搜索。我们希望RNAWRE将有助于RNA修饰的研究。数据库网址:http://rnawre.bio2db.com。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da0e/7327530/f71acf5a4551/baaa049f1.jpg

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