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铜绿假单胞菌菌株LMG 1272（一种非典型白线反应产生菌）的基因组序列草图

Draft Genome Sequence of Pseudomonas aeruginosa Strain LMG 1272, an Atypical White Line Reaction Producer.

作者信息

Salari Farzaneh, Zare-Mirakabad Fatemeh, Alavi Mohammad Hossein, Girard Léa, Ghafari Mahya, De Mot René, Rokni-Zadeh Hassan

机构信息

Department of Mathematics and Computer Science, Amirkabir University of Technology, Tehran, Iran.

Department of Medical Biotechnology, School of Medicine, Zanjan University of Medical Sciences, Zanjan, Iran.

出版信息

Microbiol Resour Announc. 2020 Feb 13;9(7):e01363-19. doi: 10.1128/MRA.01363-19.

DOI:10.1128/MRA.01363-19
PMID:32054708
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7019063/
Abstract

The draft genome sequence of LMG 1272, isolated from mushroom, is reported here. This strain triggers formation of a precipitate ("white line") when cocultured with However, LMG 1272 lacks the capacity to produce a cyclic lipopeptide that is typically associated with white line formation, suggesting the involvement of a different diffusible factor.

摘要

本文报道了从蘑菇中分离出的LMG 1272的基因组序列草图。该菌株与[未提及的对象]共培养时会引发沉淀物（“白线”）的形成。然而，LMG 1272缺乏产生通常与白线形成相关的环脂肽的能力，这表明存在不同的可扩散因子参与其中。

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本文引用的文献

1
100 Years Since Tolaas: Bacterial Blotch of Mushrooms in the 21 Century.100 年来的托拉斯：21 世纪的蘑菇细菌性斑点病。
Plant Dis. 2019 Nov;103(11):2714-2732. doi: 10.1094/PDIS-03-19-0589-FE. Epub 2019 Sep 27.
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Structure, properties, and biological functions of nonribosomal lipopeptides from pseudomonads.假单胞菌来源的非核糖体脂肽的结构、性质和生物学功能。
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Discovery and Biosynthesis of Azabicyclene, a Conserved Nonribosomal Peptide in Pseudomonas aeruginosa.发现和生物合成氮杂双环，铜绿假单胞菌中保守的非核糖体肽。
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antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline.antiSMASH 5.0：二次代谢产物基因组挖掘管道的更新。
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BMC Bioinformatics. 2018 Nov 6;19(1):406. doi: 10.1186/s12859-018-2432-7.
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Nonribosomal peptides for iron acquisition: pyochelin biosynthesis as a case study.非核糖体肽类物质的铁获取：以铜绿假单胞菌素生物合成为例。
Curr Opin Struct Biol. 2018 Dec;53:1-11. doi: 10.1016/j.sbi.2018.01.015. Epub 2018 Feb 20.
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
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8
The Pseudomonas aeruginosa antimetabolite L -2-amino-4-methoxy-trans-3-butenoic acid (AMB) is made from glutamate and two alanine residues via a thiotemplate-linked tripeptide precursor.铜绿假单胞菌代谢拮抗物 L-2-氨基-4-甲氧基-trans-3-丁烯酸（AMB）由谷氨酸和两个丙氨酸残基通过硫模板连接的三肽前体合成。
Front Microbiol. 2015 Mar 12;6:170. doi: 10.3389/fmicb.2015.00170. eCollection 2015.
9
Ribosomally encoded antibacterial proteins and peptides from Pseudomonas.假单胞菌核糖体编码的抗菌蛋白和肽。
FEMS Microbiol Rev. 2014 Jul;38(4):523-68. doi: 10.1111/1574-6976.12079. Epub 2014 Jul 3.
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To settle or to move? The interplay between two classes of cyclic lipopeptides in the biocontrol strain Pseudomonas CMR12a.定居还是迁移？两类型环状脂肽在生防菌 Pseudomonas CMR12a 中的相互作用。
Environ Microbiol. 2014 Jul;16(7):2282-300. doi: 10.1111/1462-2920.12462. Epub 2014 Apr 28.