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基于分子对接技术的三七抗心肌缺血活性成分筛选

[Screening of active anti-myocardial ischemia components of Panax notoginseng based on molecular docking technology].

作者信息

Lin Chuan-Yan, Li Chen-Zi, Li Chang, Feng Liang, Jia Xiao-Bin

机构信息

the Third Clinical Medical College, Nanjing University of Chinese Medicine Nanjing 210028, China.

School of Traditional Chinese Medicine, China Pharmaceutical University Nanjing 211198, China.

出版信息

Zhongguo Zhong Yao Za Zhi. 2020 Jun;45(11):2560-2567. doi: 10.19540/j.cnki.cjcmm.20200328.309.

Abstract

The molecular docking technology was used in this study to virtually screen the active anti-myocardial ischemic components in Panax notoginseng, clarify the compositions of the anti-myocardial ischemic component unit and the basis for pharmacological activity of P. notoginseng, and provide the basis for the acquisition of the component raw materials and the formulation design before the preparations. One hundred and nineteen compounds in P. notoginseng were collected by searching TCMSP to establish the ligand database, and TNF, IL1 B, NFKBIA, and NOS3 which were related with myocardial ischemia were selected to create the receptor database. Then Discovery Studio software LibDock module was used to dock the ligands and receptors, with the approved small-molecule drugs which were related to targets or the treatment of myocardial ischemia disease in the DrugBank as the reference, and the average scores of approved small-molecule drugs were set as the threshold. A total of 13 compounds with a score above the threshold and in the top ranking were virtually screened. The study showed that all the 13 components screened out were saponins, which constituted the main component unit of the anti-myocardial ischemic activity of P. notoginseng, namely the P. notoginseng saponin components. After the comparative analysis of the main active residues of the approved commercial drugs and P. notoginseng saponin components on each target, the similarity of their effects suggested that the P. notoginseng saponin components may have the same anti-myocardial ischemic efficacy as clinical drugs. The components of P. notoginseng which exerted anti-myocardial ischemic activity were mainly the saponin components. The preliminary screening of the active anti-myocardial ischemic components of P. notoginseng had been completed, which provided a certain reference for the development of anti-myocardial ischemic Chinese medicine component preparations.

摘要

本研究采用分子对接技术对三七中抗心肌缺血活性成分进行虚拟筛选,阐明抗心肌缺血成分单元的组成及三七药理活性的依据,为制剂前成分原料的获取及制剂设计提供依据。通过检索中药系统药理学数据库与分析平台(TCMSP)收集三七中的119种化合物建立配体数据库,选取与心肌缺血相关的肿瘤坏死因子(TNF)、白细胞介素1β(IL1B)、核因子κB抑制蛋白α(NFKBIA)和一氧化氮合酶3(NOS3)创建受体数据库。然后使用Discovery Studio软件的LibDock模块进行配体与受体的对接,以药物银行中与靶点或心肌缺血疾病治疗相关的已批准小分子药物作为参考,并将已批准小分子药物的平均得分设为阈值。共虚拟筛选出13种得分高于阈值且排名靠前的化合物。研究表明,筛选出的13种成分均为皂苷类,它们构成了三七抗心肌缺血活性的主要成分单元,即三七皂苷成分。通过对已批准上市药物与三七皂苷成分在各靶点上的主要活性残基进行对比分析,发现它们作用效果的相似性,提示三七皂苷成分可能具有与临床药物相同的抗心肌缺血功效。三七发挥抗心肌缺血活性的成分主要为皂苷类成分。完成了三七抗心肌缺血活性成分的初步筛选,为抗心肌缺血中药成分制剂的开发提供了一定参考。

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