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在体相溶液和晶态中,海藻糖的拉曼光谱特征。

Raman Spectroscopic Signature of Ectoine Conformations in Bulk Solution and Crystalline State.

机构信息

Bundesanstalt für Materialforschung und -prüfung (BAM), 12205, Berlin, Germany.

Freie Universität Berlin, Institut für Experimentalphysik, 14195, Berlin, Germany.

出版信息

Chemphyschem. 2020 Sep 2;21(17):1945-1950. doi: 10.1002/cphc.202000457. Epub 2020 Aug 17.

DOI:10.1002/cphc.202000457
PMID:32628316
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7540454/
Abstract

Recent crystallographic results revealed conformational changes of zwitterionic ectoine upon hydration. By means of confocal Raman spectroscopy and density functional theory calculations, we present a detailed study of this transformation process as part of a Fermi resonance analysis. The corresponding findings highlight that all resonant couplings are lifted upon exposure to water vapor as a consequence of molecular binding processes. The importance of the involved molecular groups for water binding and conformational changes upon hydration is discussed. Our approach further shows that the underlying rapid process can be reversed by carbon dioxide saturated atmospheres. For the first time, we also confirm that the conformational state of ectoine in aqueous bulk solution coincides with crystalline ectoine in its dihydrate state, thereby highlighting the important role of a few bound water molecules.

摘要

最近的晶体学结果揭示了两性离子羟乙基甘氨酸在水合作用下的构象变化。通过共聚焦拉曼光谱和密度泛函理论计算,我们对这一转变过程进行了详细研究,作为费米共振分析的一部分。相应的发现强调,所有共振耦合在暴露于水蒸气时都会被解除,这是分子结合过程的结果。讨论了涉及的分子基团在水结合和水合作用构象变化中的重要性。我们的方法还进一步表明,基础的快速过程可以被二氧化碳饱和气氛逆转。我们首次还证实,在水溶液中游离态的羟乙基甘氨酸的构象状态与二水合晶体羟乙基甘氨酸的状态一致,从而突出了少数结合水分子的重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c479/7540454/4433a0609716/CPHC-21-1945-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c479/7540454/5618c0f3d0eb/CPHC-21-1945-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c479/7540454/04d9d0bf8c9b/CPHC-21-1945-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c479/7540454/fb79a38c910b/CPHC-21-1945-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c479/7540454/ee398249bff5/CPHC-21-1945-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c479/7540454/10acac8415a6/CPHC-21-1945-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c479/7540454/4433a0609716/CPHC-21-1945-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c479/7540454/5618c0f3d0eb/CPHC-21-1945-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c479/7540454/04d9d0bf8c9b/CPHC-21-1945-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c479/7540454/fb79a38c910b/CPHC-21-1945-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c479/7540454/ee398249bff5/CPHC-21-1945-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c479/7540454/10acac8415a6/CPHC-21-1945-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c479/7540454/4433a0609716/CPHC-21-1945-g006.jpg

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本文引用的文献

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Ectoine interaction with DNA: influence on ultraviolet radiation damage.ECTOINE 与 DNA 的相互作用:对紫外线辐射损伤的影响。
Phys Chem Chem Phys. 2020 Apr 6;22(13):6984-6992. doi: 10.1039/d0cp00092b.
2
Hydroxyl radical scavenging of the compatible solute ectoine generates two N-acetimides.相容溶质海藻糖的羟自由基清除生成两种 N-乙酰基酰胺。
Arch Biochem Biophys. 2019 Oct 15;674:108097. doi: 10.1016/j.abb.2019.108097. Epub 2019 Sep 5.
3
Influence of compatible solute ectoine on distinct DNA structures: thermodynamic insights into molecular binding mechanisms and destabilization effects.
低能电子对凝聚相 DNA 及其组成成分的损伤。
Int J Mol Sci. 2021 Jul 23;22(15):7879. doi: 10.3390/ijms22157879.
相容溶质海藻糖对不同 DNA 结构的影响:分子结合机制和去稳定化效应的热力学研究。
Phys Chem Chem Phys. 2018 Oct 17;20(40):25861-25874. doi: 10.1039/c8cp03543a.
4
Aqueous ionic liquids in comparison with standard co-solutes : Differences and common principles in their interaction with protein and DNA structures.与标准共溶质相比的水性离子液体:它们与蛋白质和DNA结构相互作用中的差异和共同原理。
Biophys Rev. 2018 Jun;10(3):809-824. doi: 10.1007/s12551-018-0414-7. Epub 2018 Apr 2.
5
Role of the Extremolytes Ectoine and Hydroxyectoine as Stress Protectants and Nutrients: Genetics, Phylogenomics, Biochemistry, and Structural Analysis.极端嗜盐菌胞外相容性溶质(如四氢嘧啶和羟基四氢嘧啶)作为应激保护剂和营养物质的作用:遗传学、系统发育基因组学、生物化学及结构分析
Genes (Basel). 2018 Mar 22;9(4):177. doi: 10.3390/genes9040177.
6
Ectoine protects DNA from damage by ionizing radiation.四氢嘧啶能保护 DNA 免受电离辐射的损伤。
Sci Rep. 2017 Nov 10;7(1):15272. doi: 10.1038/s41598-017-15512-4.
7
DNA protection by ectoine from ionizing radiation: molecular mechanisms.依克多因对电离辐射的DNA保护作用:分子机制
Phys Chem Chem Phys. 2017 Sep 27;19(37):25717-25722. doi: 10.1039/c7cp02860a.
8
Ectoine can enhance structural changes in DNA in vitro.四氢嘧啶能增强体外 DNA 的结构变化。
Sci Rep. 2017 Aug 3;7(1):7170. doi: 10.1038/s41598-017-07441-z.
9
Combined influence of ectoine and salt: spectroscopic and numerical evidence for compensating effects on aqueous solutions.依克多因与盐的联合影响:对水溶液补偿作用的光谱和数值证据
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