G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, Federal Research Center "Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences", Pushchino, Moscow region 142290, Russia.
Research Center of Biotechnology, Russian Academy of Sciences, Moscow 119071, Russia.
Int J Syst Evol Microbiol. 2020 Aug;70(8):4646-4652. doi: 10.1099/ijsem.0.004323. Epub 2020 Jul 15.
Novel aerobic, restricted facultatively methylotrophic bacteria were isolated from buds of English oak ( L.; strain Dub) and northern red oak ( L.; strain KrD). The isolates were Gram-negative, asporogenous, motile short rods that multiplied by binary fisson. They utilized methanol, methylamine and a few polycarbon compounds as carbon and energy sources. Optimal growth occurred at 25 °C and pH 7.5. The dominant phospholipids were phosphatidylethanolamine, phosphatidylcholine, diphosphatidylglycerol and phoshatidylglycerol. The major cellular fatty acids of cells were C ω7, 11-methyl C ω7 and C. The major ubiquinone was Q-10. Analysis of 16S rRNA gene sequences showed that the strains were closely related to the members of the genus : S113(97.5-98.0 %), S1 (97.4-97.6 %) and PG04(97.0-97.2 %). The 16S rRNA gene sequence similarity between strains Dub and KrD was 99.7 %, and the DNA-DNA hybridization (DDH) result between the strains was 85 %. The ANI and the DDH values between strain Dub and S113 were 80.1 and 21.5 %, respectively. Genome sequencing of the strain Dub revealed a genome size of 3.57 Mbp and a G+C content of 67.0 mol%. Based on the results of the phenotypic, chemotaxonomic and genotypic analyses, it is proposed that the isolates be assigned to the genus as sp. nov. with the type strain Dub (=VKM B-3284=CCUG 73648=JCM 33463).
从英国栎(L.)和北美红栎(L.)的芽中分离到新型好氧、限制兼性甲基营养细菌。这些分离株为革兰氏阴性、无孢子、运动短杆菌,通过二分分裂繁殖。它们利用甲醇、甲胺和一些多碳酸化合物作为碳源和能源。最佳生长温度为 25°C,pH 值为 7.5。主要磷脂为磷脂酰乙醇胺、磷脂酰胆碱、双磷脂酰甘油和磷脂酰甘油。细胞脂肪酸的主要成分是 Cw7、11-甲基 Cw7 和 Cw3。主要的泛醌是 Q-10。16S rRNA 基因序列分析表明,这些菌株与属内的成员密切相关:S113(97.5-98.0%)、S1(97.4-97.6%)和 PG04(97.0-97.2%)。Dub 株和 KrD 株之间的 16S rRNA 基因序列相似性为 99.7%,菌株间的 DNA-DNA 杂交(DDH)结果为 85%。Dub 株与 S113 株的 ANI 和 DDH 值分别为 80.1%和 21.5%。Dub 株的基因组测序显示其基因组大小为 3.57 Mbp,G+C 含量为 67.0%mol。基于表型、化学分类和基因分析的结果,建议将这些分离株归入属为 sp. nov.,其模式株为 Dub 株(=VKM B-3284=CCUG 73648=JCM 33463)。