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从印度喀拉拉邦生活污水中分离出的发酵乳杆菌菌株的基因组序列草图

Draft Genome Sequence of a Lactobacillus fermentum Strain Isolated from Domestic Sewage in Kerala, India.

作者信息

Babu Pradeesh, Veedu Archana Palillam, Prakash Vidhya, Prasad Megha, Salim Amrita, Madhavan Ajith, Nair Bipin G, Pal Sanjay

机构信息

School of Biotechnology, Amrita Vishwa Vidyapeetham, Kollam, Kerala, India.

School of Biotechnology, Amrita Vishwa Vidyapeetham, Kollam, Kerala, India

出版信息

Microbiol Resour Announc. 2020 Jul 16;9(29):e00713-20. doi: 10.1128/MRA.00713-20.

DOI:10.1128/MRA.00713-20
PMID:32675192
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7365803/
Abstract

We report the draft genome sequence of a putative probiotic strain, ASBT-2, isolated from domestic sewage in Kerala, India. The strain showed probiotic properties (tolerance to low pH and bile salts, binding to host matrix) and reduced the coliform count by 90% in a biofilter used to treat wastewater.

摘要

我们报告了从印度喀拉拉邦生活污水中分离出的一种假定益生菌菌株ASBT-2的基因组序列草图。该菌株具有益生菌特性（耐低pH值和胆盐，与宿主基质结合），并在用于处理废水的生物滤池中使大肠菌群数量减少了90%。

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本文引用的文献

1
Draft Genome Sequence of an Escherichia coli Sequence Type 155 Strain Isolated from Sewage in Kerala, India.从印度喀拉拉邦污水中分离出的大肠杆菌序列类型155菌株的基因组序列草图
Microbiol Resour Announc. 2019 Jul 3;8(27):e01707-18. doi: 10.1128/MRA.01707-18.
2
LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly.LR_Gapcloser：一种基于平铺路径的缺口闭合器，它使用长读长来完成基因组组装。
Gigascience. 2019 Jan 1;8(1):giy157. doi: 10.1093/gigascience/giy157.
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Curr Pharm Biotechnol. 2017;18(2):138-149. doi: 10.2174/1389201017666161229153530.
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Role of universal 16S rRNA gene PCR and sequencing in diagnosis of prosthetic joint infection.通用 16S rRNA 基因 PCR 和测序在人工关节感染诊断中的作用。
J Clin Microbiol. 2012 Mar;50(3):583-9. doi: 10.1128/JCM.00170-11. Epub 2011 Dec 14.
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Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems.Illumina HiSeq 和基因组分析仪系统生成的基因组高通量测序数据评估。
Genome Biol. 2011 Nov 8;12(11):R112. doi: 10.1186/gb-2011-12-11-r112.
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Anti-infective properties of Lactobacillus fermentum against Staphylococcus aureus and Pseudomonas aeruginosa.发酵乳杆菌对金黄色葡萄球菌和铜绿假单胞菌的抗感染特性。
J Mol Microbiol Biotechnol. 2011;20(3):137-43. doi: 10.1159/000328512. Epub 2011 Jun 24.
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Prodigal: prokaryotic gene recognition and translation initiation site identification.普罗迪格：原核基因识别和翻译起始位点鉴定。
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
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Microb Ecol Health Dis. 2009 Apr;21(1):1-27. doi: 10.1080/08910600902815561. Epub 2009 Mar 16.
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