Temasek Life Sciences Laboratory, 1 Research Link, Singapore 117604.
Department of Biological Sciences, National University of Singapore, Singapore 117558.
Int J Syst Evol Microbiol. 2020 Aug;70(8):4725-4729. doi: 10.1099/ijsem.0.004338. Epub 2020 Jul 20.
An anaerobic bacterial strain, named TLL-A4, was isolated from fecal pellets of conventionally raised C57BL/6J mice. Analysis of the 16S rRNA gene indicated that the strain belongs to the phylum Bacteroidetes and, more specifically, to the recently proposed (also known as S24-7 clade or Homeothermaceae). Strain TLL-A4's 16S rRNA gene shared 92.8 % sequence identity with the type strain of the only published species of the genus , DSM 28989. Genome-sequencing of TLL-A4 was performed to compare average amino acid identity (AAI) value and percentage of conserved proteins (POCP) between both strains. The AAI analysis revealed that strain TLL-A4 had high identity (69.8 %) with DSM 28989, while the POCP was 56 %. These values indicate that strain TLL-A4 could be considered a member of the genus but not belonging to the species . Quinone analysis indicated MK10 (63 %) and MK11 (32 %) as major quinones in the membrane, while MK9 was only present as a minor component (5 %). The main cellular fatty acid was anteiso-C (42.8 %); summed feature 11 (17.5 %), C iso (13.4 %), C ω9 (5.6 %), C 3-OH (4.5 %) and C (4.2 %) were detected in minor amounts. Analysis of enzyme activities using the API 32A and API 20A kits indicated major differences between strain TLL-A4 and DSM 28989. Based on genotypic, phylogenetic and phenotypic differences, strain TLL-A4 is considered to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain is TLL-A4 (=DSM 108194=KCTC 15770).
从常规饲养的 C57BL/6J 小鼠的粪便颗粒中分离到一株厌氧细菌菌株,命名为 TLL-A4。16S rRNA 基因分析表明,该菌株属于拟杆菌门,更具体地说,属于最近提出的 (也称为 S24-7 分支或 Homeothermaceae)。菌株 TLL-A4 的 16S rRNA 基因与属内唯一已发表种的模式菌株 DSM 28989 共享 92.8%的序列同一性。对 TLL-A4 进行基因组测序,以比较两株菌的平均氨基酸同一性(AAI)值和保守蛋白百分比(POCP)。AAI 分析表明,菌株 TLL-A4 与 DSM 28989 具有高度同一性(69.8%),而 POCP 为 56%。这些值表明,菌株 TLL-A4 可以被认为是属的成员,但不属于种 。醌分析表明,MK10(63%)和 MK11(32%)是膜中的主要醌,而 MK9 仅作为次要成分存在(5%)。主要的细胞脂肪酸是 anteiso-C(42.8%);特征 11(17.5%)、C iso(13.4%)、C ω9(5.6%)、C 3-OH(4.5%)和 C(4.2%)的含量较少。使用 API 32A 和 API 20A 试剂盒分析酶活性表明,菌株 TLL-A4 与 DSM 28989 之间存在重大差异。基于基因型、系统发育和表型差异,菌株 TLL-A4 被认为代表了属的一个新种,建议使用 sp. nov. 命名。模式菌株为 TLL-A4(=DSM 108194=KCTC 15770)。