Korean Collection for Type Cultures, Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology, Jeongeup, 56212, Republic of Korea.
Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea.
Curr Microbiol. 2023 Feb 1;80(3):91. doi: 10.1007/s00284-023-03190-7.
A Gram-negative, obligate anaerobic, non-motile, non-spore-forming, rod-shaped bacterial strain designated AGMB00274 was isolated from swine faeces. An 16S rRNA gene analysis indicated that strain AGMB00274 belonged to the genus Parabacteroides, with the highest similarity to Parabacteroides johnsonii (P. johnsonii) DSM 18315 (sequence similarity of 94.9%). The genome size of strain AGMB00274 was 4,308,683 bp, with a DNA G+C content of 42.5 mol%. The biochemical analysis of strain AGMB00274 showed that it was positive for gelatin hydrolysis and α-fucosidase, but negative for the acid production from D-glucose, D-mannitol, D-maltose, salicin, glycerol, D-cellobiose, D-mannose, D-melezitose, D-sorbitol, D-trehalose, and negative for α-arabinosidase, glutamic acid decarboxylase, and pyroglutamic acid arylamidase. The dominant cellular fatty acids (> 10%) of the isolate were anteiso-C (23.2%), iso-C (16.6%), C ω9c (16.4%), summed feature 11 (iso-C 3-OH and/or C DMA) (12.5%), and C (11.3%). The major respiratory quinones of strain AGMB00274 were MK-9 (55.4%) and MK-10 (44.6%). The major polar lipid was phosphatidylethanolamine. Based on phylogenetic, genetic, physiological, and chemotaxonomic analyses, as a novel species of the genus Parabacteroides, strain AGMB00274 was proposed with the name Parabacteroides faecalis sp. nov. The type strain used was AGMB00274 (= KCTC 25286 = GDMCC 1.2742).
从猪粪便中分离到一株革兰氏阴性、专性厌氧、非运动、非孢子形成的杆状细菌菌株,命名为 AGMB00274。16S rRNA 基因分析表明,菌株 AGMB00274 属于拟杆菌属,与约翰逊拟杆菌(P. johnsonii)DSM 18315(序列相似度为 94.9%)的相似度最高。菌株 AGMB00274 的基因组大小为 4,308,683 bp,GC 含量为 42.5 mol%。菌株 AGMB00274 的生化分析表明,其阳性反应包括明胶水解和 α-岩藻糖苷酶,但阴性反应包括从 D-葡萄糖、D-甘露醇、D-麦芽糖、水杨苷、甘油、D-纤维二糖、D-甘露糖、D-蜜二糖、D-山梨醇、D-海藻糖产酸,且阴性反应包括 α-阿拉伯糖苷酶、谷氨酸脱羧酶和吡咯烷酮羧酸酰胺酶。该分离株的主要细胞脂肪酸(>10%)为 anteiso-C(23.2%)、iso-C(16.6%)、C ω9c(16.4%)、summed feature 11(iso-C 3-OH 和/或 C DMA)(12.5%)和 C(11.3%)。菌株 AGMB00274 的主要呼吸醌为 MK-9(55.4%)和 MK-10(44.6%)。主要极性脂为磷脂酰乙醇胺。基于系统发育、遗传、生理和化学分类学分析,菌株 AGMB00274 作为拟杆菌属的一个新种,被提议命名为粪拟杆菌(Parabacteroides faecalis)sp. nov.。使用的模式菌株为 AGMB00274(=KCTC 25286=GDMCC 1.2742)。