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通过基因工程与分子模拟相结合探索西松烷类生物合成的催化级联反应。

Exploring the catalytic cascade of cembranoid biosynthesis by combination of genetic engineering and molecular simulations.

作者信息

Schrepfer Patrick, Ugur Ilke, Klumpe Sven, Loll Bernhard, Kaila Ville R I, Brück Thomas

机构信息

Werner Siemens-Chair of Synthetic Biotechnology, Department of Chemistry, Technical University of Munich, Lichtenbergstr. 4, 85748 Garching, Germany.

Center of Integrated Protein Science, Munich at the Department of Chemistry, Technical University of Munich, Lichtenbergstr. 4, 85748 Garching, Germany.

出版信息

Comput Struct Biotechnol J. 2020 Jun 25;18:1819-1829. doi: 10.1016/j.csbj.2020.06.030. eCollection 2020.

Abstract

While chemical steps involved in bioactive cembranoid biosynthesis have been examined, the corresponding enzymatic mechanisms leading to their formation remain elusive. In the tobacco plant, a putative cembratriene-ol synthase (CBTS) initiates the catalytic cascade that lead to the biosynthesis of cembratriene-4,6-diols, which displays antibacterial- and anti-proliferative activities. We report here on structural homology models, functional studies, and mechanistic explorations of this enzyme using a combination of biosynthetic and computational methods. This approach guided us to develop an efficient production of five bioactive non- and monohydroxylated cembranoids. Our homology models in combination with quantum and classical simulations suggested putative principles of the CBTS catalytic cycle, and provided a possible rationale for the formation of premature olefinic side products. Moreover, the functional reconstruction of a -derived class II P450 with a cognate CPR, obtained by transcriptome mining provided for production of bioactive cembratriene-4,6-diols. Our combined findings provide mechanistic insights into cembranoid biosynthesis, and a basis for the sustainable industrial production of highly valuable bioactive cembranoids.

摘要

虽然已经对生物活性西柏烷类生物合成中涉及的化学步骤进行了研究,但导致其形成的相应酶促机制仍然不清楚。在烟草植物中,一种假定的西柏三烯醇合酶(CBTS)启动了催化级联反应,该反应导致具有抗菌和抗增殖活性的西柏三烯-4,6-二醇的生物合成。我们在此报告使用生物合成和计算方法相结合对该酶进行的结构同源性模型、功能研究和机制探索。这种方法指导我们高效生产了五种生物活性非羟基化和单羟基化西柏烷类化合物。我们的同源性模型与量子和经典模拟相结合,提出了CBTS催化循环的假定原理,并为过早形成烯属副产物提供了可能的理论依据。此外,通过转录组挖掘获得的具有同源CPR的源自α的II类P450的功能重建,为生物活性西柏三烯-4,6-二醇的生产提供了条件。我们的综合研究结果为西柏烷类生物合成提供了机制见解,并为高价值生物活性西柏烷类化合物的可持续工业生产奠定了基础。

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