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通过综合生物信息学分析鉴定出与上皮-间质转化及膀胱癌预后相关的新型潜在生物标志物。

Novel Potential Biomarkers Associated With Epithelial to Mesenchymal Transition and Bladder Cancer Prognosis Identified by Integrated Bioinformatic Analysis.

作者信息

Wang Chengyuan, Yang Yujing, Yin Lei, Wei Ningde, Hong Ting, Sun Zuyu, Yao Jiaxi, Li Zhi, Liu Tao

机构信息

Department of Urology, The First Affiliated Hospital of China Medical University, Shenyang, China.

Department of Medical Oncology, The First Affiliated Hospital of China Medical University, Shenyang, China.

出版信息

Front Oncol. 2020 Jun 30;10:931. doi: 10.3389/fonc.2020.00931. eCollection 2020.

DOI:10.3389/fonc.2020.00931
PMID:32695668
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7338771/
Abstract

Bladder cancer (BC) is one of the most common malignancies in terms of incidence and recurrence worldwide. The aim of this study was to identify novel prognostic biomarkers related to BC progression utilizing weighted gene co-expression network analysis (WGCNA) and further bioinformatic analysis. First, we constructed a co-expression network by using WGCNA among 274 TCGA-BLCA patients and preliminarily screened out four genes (CORO1C, TMPRSS4, PIK3C2B, and ZNF692) associated with advanced clinical traits. In support, GSE19915 and specimens from 124 patients were used to validate the genes selected by WGCNA; then, CORO1C and TMPRSS4 were confirmed as hub genes with strong prognostic values in BC. Moreover, the result of gene set enrichment analysis (GSEA) and gene set variation analysis (GSVA) indicated that CORO1C and TMPRSS4 might be involved in the process of epithelial to mesenchymal transition (EMT) reversely. In addition, high expression of CORO1C was found to be significantly correlated with tumor-infiltrating neutrophils (TINs), a negative regulatory component that facilitates tumor distant progression and induces poor clinical outcome. In conclusion, our study first identified CORO1C and TMPRSS4 as vital regulators in the process of tumor progression through influencing EMT and could be developed to effective prognostic and therapeutic targets in future BC treatment.

摘要

膀胱癌(BC)是全球发病率和复发率最高的常见恶性肿瘤之一。本研究旨在利用加权基因共表达网络分析(WGCNA)和进一步的生物信息学分析,确定与BC进展相关的新型预后生物标志物。首先,我们通过WGCNA在274例TCGA-BLCA患者中构建了共表达网络,并初步筛选出与晚期临床特征相关的四个基因(CORO1C、TMPRSS4、PIK3C2B和ZNF692)。作为支持,我们使用GSE19915和124例患者的样本对WGCNA筛选出的基因进行验证;然后,CORO1C和TMPRSS4被确认为在BC中具有强大预后价值的核心基因。此外,基因集富集分析(GSEA)和基因集变异分析(GSVA)的结果表明,CORO1C和TMPRSS4可能反向参与上皮-间质转化(EMT)过程。此外,发现CORO1C的高表达与肿瘤浸润性中性粒细胞(TINs)显著相关,TINs是促进肿瘤远处进展并导致不良临床结果的负调节成分。总之,我们的研究首次通过影响EMT将CORO1C和TMPRSS4确定为肿瘤进展过程中的重要调节因子,并且在未来的BC治疗中可能发展成为有效的预后和治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b9f/7338771/d9aa35ed3403/fonc-10-00931-g0008.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b9f/7338771/d9aa35ed3403/fonc-10-00931-g0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b9f/7338771/ac2b3ef3c1c2/fonc-10-00931-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b9f/7338771/4331ad54fb49/fonc-10-00931-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b9f/7338771/514daa300159/fonc-10-00931-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b9f/7338771/5273831ca646/fonc-10-00931-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b9f/7338771/4aa9fad913ee/fonc-10-00931-g0005.jpg
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