Department of Computer Science, Military Institute of the Ministry of Defense , Tiraspol, Moldova.
Department of Computer-aided Molecular Design, Institute of Physiologically Active Compounds of the Russian Academy of Science , Chernogolovka, Russia.
SAR QSAR Environ Res. 2020 Aug;31(8):615-641. doi: 10.1080/1062936X.2020.1791250. Epub 2020 Jul 27.
The acute toxicity of organic compounds towards was subjected to QSAR analysis. The two-dimensional simplex representation of molecular structure (2D SiRMS) and the support vector machine (SVM), gradient boosting (GBM) methods were used to develop QSAR models. Adequate regression QSAR models were developed for incubation of 24 h. Their interpretation allowed us to quantitatively describe and rank the well-known toxicophores, to refine their molecular surroundings, and to distinguish the structural derivatives of the fragments that significantly contribute to the acute toxicity (LC) of organic compounds towards . Based on the results of the interpretation of the regression models, a molecular design (modification) of highly toxic compounds was performed in order to reduce their hazard. In addition, acceptable classification QSAR models were developed to reliably predict the following mode of action (MOA): specific and non-specific toxicity of organic compounds towards . When interpreting these models, we were able to determine the structural fragments and the physicochemical characteristics of molecules that are responsible for the manifestation of one of the modes of action. The on-line version of the OCHEM expert system (https://ochem.eu), HYBOT descriptors, and the random forest and SVM methods were used for a comparative QSAR investigation.
有机化合物对 的急性毒性进行了定量构效关系分析。采用二维单纯形分子结构表示法(2D SiRMS)和支持向量机(SVM)、梯度提升(GBM)方法构建定量构效关系模型。为 24 小时孵育开发了足够的回归定量构效关系模型。它们的解释允许我们定量描述和对已知毒性基团进行排序,细化其分子环境,并区分对有机化合物对 的急性毒性(LC)有显著贡献的片段的结构衍生物。基于回归模型解释的结果,对高毒性化合物进行了分子设计(修饰),以降低其危害。此外,还开发了可接受的分类定量构效关系模型,以可靠地预测有机化合物对 的以下作用模式(MOA):特异性和非特异性毒性。在解释这些模型时,我们能够确定负责表现一种作用模式的结构片段和分子的物理化学特性。在线版的 OCHEM 专家系统(https://ochem.eu)、HYBOT 描述符以及随机森林和 SVM 方法被用于比较定量构效关系研究。