Maselko Jacek, Andrews Kimberly R, Hohenlohe Paul A
College of Science, Bioinformatics and Computational Biology Program University of Idaho Moscow ID USA.
Alaska Fisheries Science Center NOAA National Marine Fisheries Service Juneau AK USA.
Ecol Evol. 2020 May 25;10(13):6435-6448. doi: 10.1002/ece3.6378. eCollection 2020 Jul.
Maintenance of genetic variation may provide resilience of populations to natural environmental variability. We used Pacific ocean perch (POP; ) to test for the maintenance of adaptive variation across overlapping generations. POP are a long-lived species characterized by widespread larval dispersal in their first year and a longevity of over 100 years. In order to understand how early marine dispersal affects POP survival and population structure, we used restriction site-associated DNA sequencing (RADseq) to obtain 11,146 single-nucleotide polymorphisms (SNPs) from 401 young-of-the-year (YOY) POP collected during surveys conducted in 2014 (19 stations) and 2015 (4 stations) in the eastern Gulf of Alaska. Population clustering analysis showed that the POP samples represented four distinct ancestral populations mixed throughout the sampling area. Based on prior work on larval dispersal of POP, these larvae are most likely from distinct parturition locations that are mixing during their pelagic dispersal life stage. Latent factor mixed models revealed that POP larvae face significant selection during their first year at sea, which is specific to the year of their birth. Thus each adult cohort's genetic composition is heavily influenced by the environmental conditions experienced during their first year at sea. Long-lived species relying on broadcast spawning strategies may therefore be uniquely resilient to environmental variability by maintaining a portfolio of cohort-specific adaptive genotypes, and age truncation due to overfishing of older cohorts may have detrimental effect on the population viability.
维持遗传变异可能使种群对自然环境变化具有恢复力。我们利用太平洋鲈鱼(POP)来测试重叠世代间适应性变异的维持情况。POP是一种长寿物种,其特点是在第一年广泛进行幼体扩散,寿命超过100年。为了了解早期海洋扩散如何影响POP的生存和种群结构,我们使用限制性位点关联DNA测序(RADseq)从2014年(19个站点)和2015年(4个站点)在阿拉斯加湾东部进行的调查中收集的401尾当年幼鱼(YOY)POP中获得了11146个单核苷酸多态性(SNP)。种群聚类分析表明,POP样本代表了在整个采样区域混合的四个不同的祖先种群。基于之前对POP幼体扩散的研究,这些幼体很可能来自不同的产仔地点,它们在浮游扩散生命阶段混合在一起。潜在因子混合模型显示,POP幼体在海上的第一年面临显著的选择,这与它们出生的年份有关。因此,每个成年群体的遗传组成都受到它们在海上第一年所经历的环境条件的严重影响。因此,依靠散播产卵策略的长寿物种可能通过维持一系列特定群体的适应性基因型而对环境变化具有独特的恢复力,而由于对老年群体过度捕捞导致的年龄截断可能对种群生存力产生不利影响。