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sp. nov.,一种从南海冷泉场采集的沉积物中分离出的细菌。

sp. nov., a bacterium isolated from sediment collected at a cold seep field in the South China Sea.

机构信息

Center for Ocean Mega-Science, Chinese Academy of Sciences, 7 Nanhai Road, Qingdao 266071, PR China.

Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, 7 Nanhai Road, Qingdao 266071, PR China.

出版信息

Int J Syst Evol Microbiol. 2020 Sep;70(9):4897-4902. doi: 10.1099/ijsem.0.004352.

Abstract

A novel bacterium, designated strain KXZD1103, was isolated from sediment collected at a cold seep field of the Formosa Ridge in the South China Sea. Cells were Gram-stain-negative, facultatively anaerobic, motile, oxidase- and catalase-positive, and grew optimally at 28 °C, pH 6.0-pH 7.0 and in the presence of 1-3 % (w/v) NaCl. The major cellular fatty acids were summed feature 8 (C ω7/C ω6), summed feature 3 (C ω7/C ω6) and C. The major respiratory ubiquinone was Q-8. The predominant polar lipids were diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylglycerol. Analysis of 16S rRNA gene sequences revealed that strain KXZD1103 grouped with members of the genus , with 4CA (98.1 % sequence similarity) and R4-8 (97.7 %) as its closest neighbours. Genome sequencing revealed a genome size of 4.17 Mb and a DNA G+C content of 50.1 %. Genomic average nucleotide identity values for strain KXZD1103 with the type strains within the genus ranged from 71.0 to 75.7 %, while the DNA-DNA hybridization values for strain KXZD1103 with these strains ranged from 16.1 to 21.6 %. On the basis of the results of phylogenetic, phenotypic and chemotaxonomic analyses, strain KXZD1103 is considered to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain is KXZD1103 (=KCTC 72678=MCCC 1K04283).

摘要

从南海 Formosa 海脊冷泉场采集的沉积物中分离到一株新的细菌,命名为 KXZD1103 菌株。细胞革兰氏阴性,兼性厌氧,运动,氧化酶和过氧化氢酶阳性,最适生长温度为 28°C,pH6.0-pH7.0,在 1-3%(w/v)NaCl 存在下生长。主要细胞脂肪酸为总和特征 8(C ω7/C ω6)、总和特征 3(C ω7/C ω6)和 C。主要呼吸醌为 Q-8。主要极性脂为双磷脂酰甘油、磷脂酰乙醇胺和磷脂酰甘油。16S rRNA 基因序列分析表明,菌株 KXZD1103 与属内成员聚为一簇,与 4CA(98.1%序列相似性)和 R4-8(97.7%)最为接近。基因组测序显示基因组大小为 4.17Mb,DNA G+C 含量为 50.1%。与属内模式菌株的基因组平均核苷酸同一性值为 71.0-75.7%,而与这些菌株的 DNA-DNA 杂交值为 16.1-21.6%。基于系统发育、表型和化学分类分析的结果,菌株 KXZD1103 被认为代表了属的一个新种,建议命名为 sp. nov.。模式菌株为 KXZD1103(=KCTC 72678=MCCC 1K04283)。

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