• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

免疫细胞浸润分析和生物信息学鉴定乳头状肾细胞癌微环境中的预后价值基因。

Immune Cell Infiltration and Identifying Genes of Prognostic Value in the Papillary Renal Cell Carcinoma Microenvironment by Bioinformatics Analysis.

机构信息

Department of Nephrology, The People's Hospital of China Three Gorges University; The First People's Hospital of Yichang, Yichang 443000, Hubei, China.

Department of Urology, The People's Hospital of China Three Gorges University; The First People's Hospital of Yichang, Yichang 443000, Hubei, China.

出版信息

Biomed Res Int. 2020 Jul 25;2020:5019746. doi: 10.1155/2020/5019746. eCollection 2020.

DOI:10.1155/2020/5019746
PMID:32775427
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7399742/
Abstract

Papillary renal cell carcinoma (PRCC) is one of the most common histological subtypes of renal cell carcinoma. Type 1 and type 2 PRCC are reported to be clinically and biologically distinct. However, little is known about immune infiltration and the expression patterns of immune-related genes in these two histologic subtypes, thereby limiting the development of immunotherapy for PRCC. Thus, we analyzed the expression of 22 immune cells in type 1 and type 2 PRCC tissues by combining The Cancer Genome Atlas (TCGA) database with the ESTIMATE and CIBERSORT algorithms. Subsequently, we extracted a list of differentially expressed genes associated with the immune microenvironment. Multichip mRNA microarray data sets for PRCC were downloaded from the Gene Expression Omnibus (GEO) to further validate our findings. We found that the immune scores and stromal scores were associated with overall survival in patients with type 2 PRCC rather than type 1 PRCC. Tumor-infiltrating M1 and M2 macrophages could predict the clinical outcome by reflecting the host's immune capacity against type 2 PRCC. Furthermore, CCL19/CCR7, CXCL12/CXCR4, and CCL20/CCR6 were shown to be potential new targets for tumor gene therapy in type 2 PRCC. Our findings provide valuable resources for improving immunotherapy for PRCC.

摘要

乳头状肾细胞癌 (PRCC) 是肾细胞癌中最常见的组织学亚型之一。据报道,1 型和 2 型 PRCC 在临床上和生物学上具有明显的差异。然而,对于这两种组织学亚型中的免疫浸润和免疫相关基因的表达模式知之甚少,从而限制了 PRCC 的免疫疗法的发展。因此,我们通过结合癌症基因组图谱 (TCGA) 数据库和 ESTIMATE 和 CIBERSORT 算法,分析了 1 型和 2 型 PRCC 组织中 22 种免疫细胞的表达。随后,我们提取了与免疫微环境相关的差异表达基因列表。从基因表达综合 (GEO) 下载了用于 PRCC 的多芯片 mRNA 微阵列数据集,以进一步验证我们的发现。我们发现,2 型 PRCC 的免疫评分和基质评分与患者的总生存期相关,而与 1 型 PRCC 无关。肿瘤浸润的 M1 和 M2 巨噬细胞可以通过反映宿主对 2 型 PRCC 的免疫能力来预测临床结局。此外,CCL19/CCR7、CXCL12/CXCR4 和 CCL20/CCR6 被证明是 2 型 PRCC 肿瘤基因治疗的潜在新靶点。我们的研究结果为改善 PRCC 的免疫治疗提供了有价值的资源。

相似文献

1
Immune Cell Infiltration and Identifying Genes of Prognostic Value in the Papillary Renal Cell Carcinoma Microenvironment by Bioinformatics Analysis.免疫细胞浸润分析和生物信息学鉴定乳头状肾细胞癌微环境中的预后价值基因。
Biomed Res Int. 2020 Jul 25;2020:5019746. doi: 10.1155/2020/5019746. eCollection 2020.
2
Identification of 4-genes model in papillary renal cell tumor microenvironment based on comprehensive analysis.基于综合分析鉴定乳头状肾细胞肿瘤微环境中的 4 基因模型。
BMC Cancer. 2021 May 17;21(1):553. doi: 10.1186/s12885-021-08319-0.
3
Three-gene risk model in papillary renal cell carcinoma: a robust likelihood-based survival analysis.三基因风险模型在乳头状肾细胞癌中的应用:基于似然的稳健生存分析。
Aging (Albany NY). 2020 Nov 5;12(21):21854-21873. doi: 10.18632/aging.104001.
4
Bioinformatics profiling integrating a four immune-related long non-coding RNAs signature as a prognostic model for papillary renal cell carcinoma.基于四个免疫相关长非编码 RNA 的生物信息学特征分析构建预测肾透明细胞癌预后的模型。
Aging (Albany NY). 2020 Jul 27;12(15):15359-15373. doi: 10.18632/aging.103580.
5
Identification of potential biomarkers associated with immune infiltration in papillary renal cell carcinoma.鉴定与乳头状肾细胞癌免疫浸润相关的潜在生物标志物。
J Clin Lab Anal. 2021 Nov;35(11):e24022. doi: 10.1002/jcla.24022. Epub 2021 Oct 4.
6
A construction and comprehensive analysis of ceRNA networks and infiltrating immune cells in papillary renal cell carcinoma.构建并综合分析乳头状肾细胞癌的 ceRNA 网络和浸润免疫细胞。
Cancer Med. 2021 Nov;10(22):8192-8209. doi: 10.1002/cam4.4309. Epub 2021 Oct 1.
7
Integrated Phenotypic/Genotypic Analysis of Papillary Renal Cell Carcinoma Subtypes: Identification of Prognostic Markers, Cancer-related Pathways, and Implications for Therapy.乳头状肾细胞癌亚型的综合表型/基因型分析:预后标志物、癌症相关途径的鉴定及其对治疗的影响。
Eur Urol Focus. 2018 Sep;4(5):740-748. doi: 10.1016/j.euf.2016.09.002. Epub 2016 Sep 22.
8
Cuproptosis-Related LncRNA-Based Prediction of the Prognosis and Immunotherapy Response in Papillary Renal Cell Carcinoma.基于铜死亡相关长链非编码 RNA 的预测在乳头状肾细胞癌中的预后和免疫治疗反应。
Int J Mol Sci. 2023 Jan 11;24(2):1464. doi: 10.3390/ijms24021464.
9
Integrated analysis of immune-related gene subtype and immune index for immunotherapy in clear cell renal cell carcinoma.透明细胞肾细胞癌免疫治疗的免疫相关基因亚型与免疫指标综合分析
Pathol Res Pract. 2021 Sep;225:153557. doi: 10.1016/j.prp.2021.153557. Epub 2021 Jul 20.
10
Construction of a prognostic value model in papillary renal cell carcinoma by immune-related genes.基于免疫相关基因构建乳头状肾细胞癌预后价值模型。
Medicine (Baltimore). 2021 Mar 26;100(12):e24903. doi: 10.1097/MD.0000000000024903.

引用本文的文献

1
A bird's eye view of the potential role of NFKBIA in pan-cancer.NFKBIA在泛癌中的潜在作用概述。
Heliyon. 2024 May 17;10(10):e31204. doi: 10.1016/j.heliyon.2024.e31204. eCollection 2024 May 30.
2
An Immune-Related Prognostic Risk Model in Colon Cancer by Bioinformatics Analysis.通过生物信息学分析建立的结肠癌免疫相关预后风险模型
Evid Based Complement Alternat Med. 2022 Aug 27;2022:3640589. doi: 10.1155/2022/3640589. eCollection 2022.
3
Identifying an Immune-Related Gene ST8SIA1 as a Novel Target in Patients With Clear-Cell Renal Cell Carcinoma.

本文引用的文献

1
Tumor-associated macrophages in tumor metastasis: biological roles and clinical therapeutic applications.肿瘤相关巨噬细胞在肿瘤转移中的作用:生物学功能及临床治疗应用。
J Hematol Oncol. 2019 Jul 12;12(1):76. doi: 10.1186/s13045-019-0760-3.
2
The Link between the Multiverse of Immune Microenvironments in Metastases and the Survival of Colorectal Cancer Patients.转移中的免疫微环境的多重宇宙与结直肠癌患者生存之间的联系。
Cancer Cell. 2018 Dec 10;34(6):1012-1026.e3. doi: 10.1016/j.ccell.2018.11.003.
3
Pathological roles of the homeostatic chemokine CXCL12.
鉴定免疫相关基因ST8SIA1作为肾透明细胞癌患者的新靶点
Front Pharmacol. 2022 Jul 7;13:901518. doi: 10.3389/fphar.2022.901518. eCollection 2022.
4
Identification of a Novel Risk Model: A Five-Gene Prognostic Signature for Pancreatic Cancer.一种新型风险模型的鉴定:一种用于胰腺癌的五基因预后特征。
Evid Based Complement Alternat Med. 2022 Jul 8;2022:3660110. doi: 10.1155/2022/3660110. eCollection 2022.
5
Integrated Multi-Omics Analysis Identified PTPRG and CHL1 as Key Regulators of Immunophenotypes in Clear Cell Renal Cell Carcinoma(ccRCC).综合多组学分析确定PTPRG和CHL1为透明细胞肾细胞癌(ccRCC)免疫表型的关键调节因子。
Front Oncol. 2022 Mar 30;12:832027. doi: 10.3389/fonc.2022.832027. eCollection 2022.
6
Identification of the Ferroptosis-Related Long Non-Coding RNAs Signature to Improve the Prognosis Prediction in Papillary Renal Cell Carcinoma.鉴定与铁死亡相关的长链非编码RNA特征以改善乳头状肾细胞癌的预后预测
Front Surg. 2022 Mar 4;9:741726. doi: 10.3389/fsurg.2022.741726. eCollection 2022.
7
Identification of CCL19 as a Novel Immune-Related Biomarker in Diabetic Nephropathy.鉴定CCL19作为糖尿病肾病中一种新型免疫相关生物标志物
Front Genet. 2022 Feb 9;13:830437. doi: 10.3389/fgene.2022.830437. eCollection 2022.
8
Characterizing the tumor microenvironment in rare renal cancer histological types.描述罕见肾细胞癌组织学类型的肿瘤微环境。
J Pathol Clin Res. 2022 Jan;8(1):88-98. doi: 10.1002/cjp2.241. Epub 2021 Oct 7.
稳态趋化因子 CXCL12 的病理作用。
Cytokine Growth Factor Rev. 2018 Dec;44:51-68. doi: 10.1016/j.cytogfr.2018.10.004. Epub 2018 Oct 23.
4
Comprehensive analysis of the tumor immune micro-environment in non-small cell lung cancer for efficacy of checkpoint inhibitor.非小细胞肺癌肿瘤免疫微环境的综合分析及其对检查点抑制剂疗效的影响。
Sci Rep. 2018 Oct 1;8(1):14576. doi: 10.1038/s41598-018-32855-8.
5
Checkpoint molecule PD-1-assisted CD8 T lymphocyte count in tumor microenvironment predicts overall survival of patients with metastatic renal cell carcinoma treated with tyrosine kinase inhibitors.肿瘤微环境中检查点分子PD-1辅助的CD8 T淋巴细胞计数可预测接受酪氨酸激酶抑制剂治疗的转移性肾细胞癌患者的总生存期。
Cancer Manag Res. 2018 Sep 11;10:3419-3431. doi: 10.2147/CMAR.S172039. eCollection 2018.
6
Cell Adhesion and Matrix Stiffness: Coordinating Cancer Cell Invasion and Metastasis.细胞黏附与基质硬度:协同癌细胞侵袭与转移
Front Oncol. 2018 May 4;8:145. doi: 10.3389/fonc.2018.00145. eCollection 2018.
7
The Clinical Activity of PD-1/PD-L1 Inhibitors in Metastatic Non-Clear Cell Renal Cell Carcinoma.PD-1/PD-L1 抑制剂在转移性非透明细胞肾细胞癌中的临床活性。
Cancer Immunol Res. 2018 Jul;6(7):758-765. doi: 10.1158/2326-6066.CIR-17-0475. Epub 2018 May 10.
8
Effector CD8 T cells dedifferentiate into long-lived memory cells.效应性 CD8 T 细胞去分化为长寿命记忆细胞。
Nature. 2017 Dec 21;552(7685):404-409. doi: 10.1038/nature25144. Epub 2017 Dec 13.
9
Biological/pathological functions of the CXCL12/CXCR4/CXCR7 axes in the pathogenesis of bladder cancer.CXCL12/CXCR4/CXCR7 轴在膀胱癌发病机制中的生物学/病理学功能。
Int J Clin Oncol. 2017 Dec;22(6):991-1000. doi: 10.1007/s10147-017-1187-x. Epub 2017 Oct 11.
10
Regulation of the glucocorticoid receptor via a BET-dependent enhancer drives antiandrogen resistance in prostate cancer.通过 BET 依赖性增强子调节糖皮质激素受体可导致前列腺癌对抗雄激素耐药。
Elife. 2017 Sep 11;6:e27861. doi: 10.7554/eLife.27861.