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B 族 DNA 聚合酶 ζ 结构与机制:专门用于跨损伤 DNA 合成

Structure and mechanism of B-family DNA polymerase ζ specialized for translesion DNA synthesis.

机构信息

Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Simons Electron Microscopy Center, New York Structural Biology Center, New York, NY, USA.

出版信息

Nat Struct Mol Biol. 2020 Oct;27(10):913-924. doi: 10.1038/s41594-020-0476-7. Epub 2020 Aug 17.

DOI:10.1038/s41594-020-0476-7
PMID:32807989
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7554088/
Abstract

DNA polymerase ζ (Polζ) belongs to the same B-family as high-fidelity replicative polymerases, yet is specialized for the extension reaction in translesion DNA synthesis (TLS). Despite its importance in TLS, the structure of Polζ is unknown. We present cryo-EM structures of the Saccharomyces cerevisiae Polζ holoenzyme in the act of DNA synthesis (3.1 Å) and without DNA (4.1 Å). Polζ displays a pentameric ring-like architecture, with catalytic Rev3, accessory Pol31' Pol32 and two Rev7 subunits forming an uninterrupted daisy chain of protein-protein interactions. We also uncover the features that impose high fidelity during the nucleotide-incorporation step and those that accommodate mismatches and lesions during the extension reaction. Collectively, we decrypt the molecular underpinnings of Polζ's role in TLS and provide a framework for new cancer therapeutics.

摘要

DNA 聚合酶 ζ(Polζ)属于与高保真复制聚合酶相同的 B 族,但专门用于跨损伤 DNA 合成(TLS)中的延伸反应。尽管它在 TLS 中很重要,但 Polζ 的结构尚不清楚。我们展示了酿酒酵母 Polζ 全酶在 DNA 合成过程中的 cryo-EM 结构(3.1Å)和没有 DNA 的结构(4.1Å)。Polζ 呈现出五聚体环状结构,催化亚基 Rev3、辅助亚基 Pol31' Pol32 和两个 Rev7 亚基形成连续的蛋白质-蛋白质相互作用菊花链。我们还揭示了在核苷酸掺入步骤中保证高保真度的特征,以及在延伸反应中适应错配和损伤的特征。总之,我们破解了 Polζ 在 TLS 中的作用的分子基础,并为新的癌症治疗方法提供了框架。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b1f/7554088/2ea33757dbad/nihms-1608256-f0006.jpg
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2
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3
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