从新西兰一家医院的人类分离株中获得的产新型德里金属β-内酰胺酶1（NDM-1）的多重耐药大肠杆菌的全基因组组装
Complete Genome Assembly of a Multidrug-Resistant New Delhi Metallo-β-Lactamase 1 (NDM-1)-Producing Escherichia coli Human Isolate from a New Zealand Hospital.
作者信息
Olivera Catrina, Rakonjac Jasna
机构信息
School of Fundamental Sciences, Massey University, Palmerston North, New Zealand
出版信息
Microbiol Resour Announc. 2020 Aug 20;9(34):e00780-20. doi: 10.1128/MRA.00780-20.
Abstract
We report the complete genome of a multidrug-resistant strain isolated from a New Zealand patient with a history of hospitalization in India. The strain, carrying eight plasmids, harbors chromosome-encoded and mutations, which cause nitrofuran resistance, and class C β-lactamase ( ) and plasmid-encoded , , and , as well as other antibiotic resistance genes.
摘要
我们报告了从一名有印度住院史的新西兰患者中分离出的一株多重耐药菌株的全基因组。该菌株携带8个质粒，具有导致呋喃妥因耐药性的染色体编码突变和C类β-内酰胺酶（ ）以及质粒编码的 、 和 ，以及其他抗生素耐药基因。
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本文引用的文献
1
Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates.
Antimicrob Agents Chemother. 2019 Oct 22;63(11). doi: 10.1128/AAC.00483-19. Print 2019 Nov.
2
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
3
NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
4
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
Bioinformatics. 2015 Oct 1;31(19):3210-2. doi: 10.1093/bioinformatics/btv351. Epub 2015 Jun 9.
5
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
6
In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing.
Antimicrob Agents Chemother. 2014 Jul;58(7):3895-903. doi: 10.1128/AAC.02412-14. Epub 2014 Apr 28.
7
QUAST: quality assessment tool for genome assemblies.
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
8
Identification of acquired antimicrobial resistance genes.
J Antimicrob Chemother. 2012 Nov;67(11):2640-4. doi: 10.1093/jac/dks261. Epub 2012 Jul 10.
9
Identification and molecular characterisation of New Delhi metallo-β-lactamase-1 (NDM-1)- and NDM-6-producing Enterobacteriaceae from New Zealand hospitals.
Int J Antimicrob Agents. 2012 Jun;39(6):529-33. doi: 10.1016/j.ijantimicag.2012.02.017. Epub 2012 Apr 21.
10
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data.
BMC Bioinformatics. 2010 Sep 27;11:485. doi: 10.1186/1471-2105-11-485.
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