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利用辅助计算分子动力学模拟理解氨基酚衍生的芳基硫脲对肠道碱性磷酸酶的酶抑制作用:合成、表征、SAR 和动力学分析。

Understanding the enzymatic inhibition of intestinal alkaline phosphatase by aminophenazone-derived aryl thioureas with aided computational molecular dynamics simulations: synthesis, characterization, SAR and kinetic profiling.

机构信息

Department of Chemistry, Quaid-I-Azam University, Islamabad, 45320, Pakistan.

Department of Chemistry, Allama Iqbal Open University, Islamabad, 44000, Pakistan.

出版信息

Mol Divers. 2021 Aug;25(3):1701-1715. doi: 10.1007/s11030-020-10136-9. Epub 2020 Aug 29.

DOI:10.1007/s11030-020-10136-9
PMID:32862361
Abstract

The work presented in this paper aims toward the synthesis of aryl thiourea derivatives 4a-l of pyrazole based nonsteroidal anti-inflammatory drug named 4-aminophenazone, as potential inhibitors of intestinal alkaline phosphatase enzyme. The screening of synthesized target compounds 4a-l for unraveling the anti-inflammatory potential against calf intestinal alkaline phosphatase gives rise to lead member 4c possessing IC value 0.420 ± 0.012 µM, many folds better than reference standard used (KHPO IC = 2.8 ± 0.06 µM and L-phenylalanine IC = 100 ± 3.1 µM). SAR for unfolding the active site binding pocket interaction along with the mode of enzyme inhibition based on kinetic studies is carried out which showed non-competitive binding mode. The enzyme inhibition studies were further supplemented by molecular dynamic simulations for predicting the protein behavior against active inhibitors 4c and 4g during docking analysis. The preliminary toxicity of the synthesized compounds was determined by using brine shrimp assay. This work also includes detailed biochemical analysis along with RO5 parameters for all the newly synthesized drug derivatives 4a-l.

摘要

本文旨在合成基于吡唑的非甾体抗炎药 4-氨基苯甲酮的芳基硫脲衍生物 4a-l,作为肠道碱性磷酸酶的潜在抑制剂。对合成的目标化合物 4a-l 进行筛选,以揭示其对小牛肠碱性磷酸酶的抗炎潜力,结果发现先导化合物 4c 的 IC 值为 0.420±0.012 μM,比使用的参考标准(KHPO IC = 2.8±0.06 μM 和 L-苯丙氨酸 IC = 100±3.1 μM)好得多。通过开展基于动力学研究的活性位点结合口袋相互作用的 SAR 以及酶抑制模式,揭示了非竞争性结合模式。通过分子动力学模拟进一步补充了酶抑制研究,以预测对接分析中针对活性抑制剂 4c 和 4g 的蛋白质行为。通过卤虫试验测定了合成化合物的初步毒性。这项工作还包括对所有新合成的药物衍生物 4a-l 进行详细的生化分析和 RO5 参数。

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