• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

碱性磷酸酶与天然抑制性5-氮杂吲哚吉他林C和D相互作用的计算机模拟预测

In Silico Prediction of Alkaline Phosphatase Interaction with the Natural Inhibitory 5-Azaindoles Guitarrin C and D.

作者信息

Seitkalieva Aleksandra, Noskova Yulia, Isaeva Marina, Guzii Alla, Makarieva Tatyana N, Fedorov Sergey, Balabanova Larissa

机构信息

G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch, Russian Academy of Sciences, Prospect 100-Letya Vladivostoka 152, 690022 Vladivostok, Russia.

Youth Research Laboratory of Recombinant DNA Technologies, Advanced Engineering School, Institute of Biotechnology, Bioengineering and Food Systems, Far Eastern Federal University, 10 Ajax Bay, Russky Island, 690922 Vladivostok, Russia.

出版信息

Molecules. 2024 Dec 3;29(23):5701. doi: 10.3390/molecules29235701.

DOI:10.3390/molecules29235701
PMID:39683860
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11643677/
Abstract

The natural 5-azaindoles, marine sponge guitarrin C and D, were observed to exert inhibitory activity against a highly active alkaline phosphatase (ALP) CmAP of the PhoA family from the marine bacterium , with IC values of 8.5 and 110 µM, respectively. The superimposition of CmAP complexes with -nitrophenyl phosphate (NPP), a commonly used chromogenic aryl substrate for ALP, and the inhibitory guitarrins C, D, and the non-inhibitory guitarrins A, B, and E revealed that the presence of a carboxyl group at C6 together with a hydroxyl group at C8 is a prerequisite for the inhibitory effect of 5-azaindoles on ALP activity. The 10-fold more active guitarrin C could compete with NPP for binding sites in the ALP active site due to similarities in size, three-dimensional structure, and the orientation of the COOH group along the phosphate group. However, the inhibition of CmAP and calf intestinal ALP (CIAP) by guitarrin C was observed to occur via a non-competitive mode of action, as evidenced by a twofold decrease in V and an unchanged K. In contrast, the kinetic model with guitarrin D, with an additional OH group at C7, reflected a mixed type of inhibition, with a decrease in both values. The sensitivity of CIAP to guitarrins C and D was shown to be slightly lower than that of CmAP, with IC values of 195 and 230 µM, respectively. Nevertheless, these findings prompted the prediction of complexes of human ALP isoenzymes with guitarrins C and D.

摘要

天然的5-氮杂吲哚类化合物,即海洋海绵吉他林C和D,被观察到对来自海洋细菌的PhoA家族的高活性碱性磷酸酶(ALP)CmAP具有抑制活性,其IC值分别为8.5和110μM。将CmAP复合物与对硝基苯磷酸酯(NPP,一种常用于ALP的生色芳基底物)以及抑制性的吉他林C、D和非抑制性的吉他林A、B和E进行叠加,结果表明C6位存在羧基以及C8位存在羟基是5-氮杂吲哚对ALP活性产生抑制作用的前提条件。活性高10倍的吉他林C由于其大小、三维结构以及COOH基团沿磷酸基团的取向与NPP相似,能够与NPP竞争ALP活性位点中的结合位点。然而,观察到吉他林C对CmAP和小牛肠碱性磷酸酶(CIAP)的抑制作用是通过非竞争性作用模式发生的,这表现为V降低两倍而K不变。相比之下,在C7位有一个额外OH基团的吉他林D的动力学模型反映出一种混合型抑制,两个值均降低。CIAP对吉他林C和D的敏感性略低于CmAP,其IC值分别为195和230μM。尽管如此,这些发现促使人们预测人ALP同工酶与吉他林C和D的复合物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2afe/11643677/4a40fffc7ad8/molecules-29-05701-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2afe/11643677/3ce6b88a6fd7/molecules-29-05701-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2afe/11643677/e5ca36646bf4/molecules-29-05701-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2afe/11643677/d1be607d0662/molecules-29-05701-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2afe/11643677/c3a492ea1a96/molecules-29-05701-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2afe/11643677/9685b933d1d0/molecules-29-05701-g005a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2afe/11643677/e100f957f5c9/molecules-29-05701-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2afe/11643677/06ae877aba9f/molecules-29-05701-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2afe/11643677/4a40fffc7ad8/molecules-29-05701-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2afe/11643677/3ce6b88a6fd7/molecules-29-05701-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2afe/11643677/e5ca36646bf4/molecules-29-05701-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2afe/11643677/d1be607d0662/molecules-29-05701-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2afe/11643677/c3a492ea1a96/molecules-29-05701-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2afe/11643677/9685b933d1d0/molecules-29-05701-g005a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2afe/11643677/e100f957f5c9/molecules-29-05701-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2afe/11643677/06ae877aba9f/molecules-29-05701-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2afe/11643677/4a40fffc7ad8/molecules-29-05701-g008.jpg

相似文献

1
In Silico Prediction of Alkaline Phosphatase Interaction with the Natural Inhibitory 5-Azaindoles Guitarrin C and D.碱性磷酸酶与天然抑制性5-氮杂吲哚吉他林C和D相互作用的计算机模拟预测
Molecules. 2024 Dec 3;29(23):5701. doi: 10.3390/molecules29235701.
2
Guitarrins A-E and Aluminumguitarrin A: 5-Azaindoles from the Northwestern Pacific Marine Sponge Guitarra fimbriata.吉他林 A-E 和 Aluminumguitarrin A:来自西北太平洋海洋海绵 Guitarra fimbriata 的 5-氮吲哚。
J Nat Prod. 2019 Jun 28;82(6):1704-1709. doi: 10.1021/acs.jnatprod.9b00334. Epub 2019 Jun 5.
3
A Novel Alkaline Phosphatase/Phosphodiesterase, CamPhoD, from Marine Bacterium KMM 296.一种新型的碱性磷酸酶/磷酸二酯酶,CamPhoD,来自海洋细菌 KMM 296。
Mar Drugs. 2019 Nov 22;17(12):657. doi: 10.3390/md17120657.
4
LPS-Dephosphorylating Alkaline Phosphatase of PhoA Family Divergent from the Multiple Homologues of spp.与spp.的多个同源物不同的PhoA家族的LPS去磷酸化碱性磷酸酶
Microorganisms. 2024 Mar 21;12(3):631. doi: 10.3390/microorganisms12030631.
5
Understanding the enzymatic inhibition of intestinal alkaline phosphatase by aminophenazone-derived aryl thioureas with aided computational molecular dynamics simulations: synthesis, characterization, SAR and kinetic profiling.利用辅助计算分子动力学模拟理解氨基酚衍生的芳基硫脲对肠道碱性磷酸酶的酶抑制作用:合成、表征、SAR 和动力学分析。
Mol Divers. 2021 Aug;25(3):1701-1715. doi: 10.1007/s11030-020-10136-9. Epub 2020 Aug 29.
6
Potent Alkaline Phosphatase Inhibitors, Pyrazolo-Oxothiazolidines: Synthesis, Biological Evaluation, Molecular Docking, and Kinetic Studies.强效碱性磷酸酶抑制剂:吡唑并[4,3-d]噻唑烷-4,6-二酮的合成、生物评价、分子对接和动力学研究。
Int J Mol Sci. 2022 Oct 31;23(21):13262. doi: 10.3390/ijms232113262.
7
Identification of novel chromone based sulfonamides as highly potent and selective inhibitors of alkaline phosphatases.鉴定新型色酮基磺胺类化合物作为高效且选择性的碱性磷酸酶抑制剂。
Eur J Med Chem. 2013 Aug;66:438-49. doi: 10.1016/j.ejmech.2013.06.015. Epub 2013 Jun 19.
8
In vitro and in silico evaluation of the inhibitory effect of a curcumin-based oxovanadium (IV) complex on alkaline phosphatase activity and bacterial biofilm formation.基于姜黄素的氧钒(IV)配合物对碱性磷酸酶活性和细菌生物膜形成抑制作用的体外和计算机模拟评估
Appl Microbiol Biotechnol. 2021 Jan;105(1):147-168. doi: 10.1007/s00253-020-11004-0. Epub 2020 Nov 16.
9
Synthesis, alkaline phosphatase inhibition studies and molecular docking of novel derivatives of 4-quinolones.4-喹诺酮新型衍生物的合成、碱性磷酸酶抑制研究及分子对接
Eur J Med Chem. 2017 Jan 27;126:408-420. doi: 10.1016/j.ejmech.2016.11.036. Epub 2016 Nov 17.
10
Substituted phenyl[(5-benzyl-1,3,4-oxadiazol-2-yl)sulfanyl]acetates/acetamides as alkaline phosphatase inhibitors: Synthesis, computational studies, enzyme inhibitory kinetics and DNA binding studies.取代苯基[(5-苄基-1,3,4-恶二唑-2-基)硫基]乙酸酯/酰胺类作为碱性磷酸酶抑制剂的合成、计算研究、酶抑制动力学和 DNA 结合研究。
Bioorg Chem. 2019 Sep;90:103108. doi: 10.1016/j.bioorg.2019.103108. Epub 2019 Jul 3.

本文引用的文献

1
Insights into Alkaline Phosphatase Anti-Inflammatory Mechanisms.深入了解碱性磷酸酶的抗炎机制。
Biomedicines. 2024 Nov 1;12(11):2502. doi: 10.3390/biomedicines12112502.
2
LPS-Dephosphorylating Alkaline Phosphatase of PhoA Family Divergent from the Multiple Homologues of spp.与spp.的多个同源物不同的PhoA家族的LPS去磷酸化碱性磷酸酶
Microorganisms. 2024 Mar 21;12(3):631. doi: 10.3390/microorganisms12030631.
3
Mixed and non-competitive enzyme inhibition: underlying mechanisms and mechanistic irrelevance of the formal two-site model.
混合和非竞争型酶抑制:正式的双位点模型的潜在机制和机械无关性。
J Enzyme Inhib Med Chem. 2023 Dec;38(1):2245168. doi: 10.1080/14756366.2023.2245168.
4
Azaindole derivatives as potential kinase inhibitors and their SARs elucidation.氮茚衍生物作为潜在的激酶抑制剂及其 SAR 研究。
Eur J Med Chem. 2023 Oct 5;258:115621. doi: 10.1016/j.ejmech.2023.115621. Epub 2023 Jul 1.
5
The structural pathology for hypophosphatasia caused by malfunctional tissue non-specific alkaline phosphatase.由功能失调的组织非特异性碱性磷酸酶引起的低磷酸酯酶症的结构病理学。
Nat Commun. 2023 Jul 8;14(1):4048. doi: 10.1038/s41467-023-39833-3.
6
Current status of -, -, -heterocycles as potential alkaline phosphatase inhibitors: a medicinal chemistry overview.作为潜在碱性磷酸酶抑制剂的-,-,-杂环的现状:药物化学综述。
RSC Adv. 2023 Jun 1;13(24):16413-16452. doi: 10.1039/d3ra01888a. eCollection 2023 May 30.
7
Towards a structurally resolved human protein interaction network.构建具有结构解析的人类蛋白质相互作用网络
Nat Struct Mol Biol. 2023 Feb;30(2):216-225. doi: 10.1038/s41594-022-00910-8. Epub 2023 Jan 23.
8
Potent Alkaline Phosphatase Inhibitors, Pyrazolo-Oxothiazolidines: Synthesis, Biological Evaluation, Molecular Docking, and Kinetic Studies.强效碱性磷酸酶抑制剂:吡唑并[4,3-d]噻唑烷-4,6-二酮的合成、生物评价、分子对接和动力学研究。
Int J Mol Sci. 2022 Oct 31;23(21):13262. doi: 10.3390/ijms232113262.
9
A structural biology community assessment of AlphaFold2 applications.AlphaFold2 应用的结构生物学社区评估。
Nat Struct Mol Biol. 2022 Nov;29(11):1056-1067. doi: 10.1038/s41594-022-00849-w. Epub 2022 Nov 7.
10
A critical review of mineral-microbe interaction and co-evolution: mechanisms and applications.矿物-微生物相互作用与共同进化的批判性综述:机制与应用
Natl Sci Rev. 2022 Jul 4;9(10):nwac128. doi: 10.1093/nsr/nwac128. eCollection 2022 Oct.