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为了生物经济:定义什么是合成生物学底盘!

For the sake of the Bioeconomy: define what a Synthetic Biology Chassis is!

机构信息

Systems and Synthetic Biology Department, Centro Nacional de Biotecnología (CNB-CSIC) Madrid 28049, Spain.

Interdisciplinary Computing and Complex Biosystems (ICOS) research group, Newcastle University, Newcastle Upon Tyne NE4 5TG UK.

出版信息

N Biotechnol. 2021 Jan 25;60:44-51. doi: 10.1016/j.nbt.2020.08.004. Epub 2020 Sep 2.

Abstract

At the onset of the 4th Industrial Revolution, the role of synthetic biology (SynBio) as a fuel for the bioeconomy requires clarification of the terms typically adopted by this growing scientific-technical field. The concept of the chassis as a defined, reusable biological frame where non-native components can be plugged in and out to create new functionalities lies at the boundary between frontline bioengineering and more traditional recombinant DNA technology. As synthetic biology leaves academic laboratories and starts penetrating industrial and environmental realms regulatory agencies demand clear definitions and descriptions of SynBio constituents, processes and products. In this article, the state of the ongoing discussion on what is a chassis is reviewed, a non-equivocal nomenclature for the jargon used is proposed and objective criteria are recommended for distinguishing SynBio agents from traditional GMOs. The use of genomic barcodes as unique identifiers is strongly advocated. Finally the soil bacterium Pseudomonas putida is shown as an example of the roadmap that one environmental isolate may go through to become a bona fide SynBio chassis.

摘要

在第四次工业革命的初期,合成生物学(SynBio)作为生物经济的燃料的作用需要澄清这个不断发展的科学技术领域通常采用的术语。底盘的概念是一个定义明确、可重复使用的生物框架,非天然组件可以插入和拔出,以创建新的功能,这位于前沿生物工程和更传统的重组 DNA 技术之间。随着合成生物学离开学术实验室并开始渗透到工业和环境领域,监管机构要求对 SynBio 的组成部分、过程和产品进行明确的定义和描述。本文回顾了正在进行的关于底盘是什么的讨论,提出了一个用于该领域行话的明确命名法,并建议了客观的标准来区分 SynBio 制剂和传统的转基因生物。强烈提倡使用基因组条码作为唯一标识符。最后,以土壤细菌恶臭假单胞菌为例,说明了一个环境分离物可能经历的路线,成为真正的 SynBio 底盘。

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