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对整合到近期沉积的黑海沉积物中鞭毛藻生物多样性研究的形态学和分子方法的比较分析——优点与缺点。

Comparative analysis of morphological and molecular approaches integrated into the study of the dinoflagellate biodiversity within the recently deposited Black Sea sediments - benefits and drawbacks.

作者信息

Dzhembekova Nina, Rubino Fernando, Nagai Satoshi, Zlateva Ivelina, Slabakova Nataliya, Ivanova Petya, Slabakova Violeta, Moncheva Snejana

机构信息

Institute of Oceanology "Fridtjof Nansen", Marine Biology and Ecology Department, Bulgarian Academy of Sciences, Varna, Bulgaria Institute of Oceanology "Fridtjof Nansen", Marine Biology and Ecology Department, Bulgarian Academy of Sciences Varna Bulgaria.

Water Research Institute, Unit Talassografico "A. Cerruti", National Research Council CNR-IRSA, Taranto, Italy Water Research Institute, Unit Talassografico "A. Cerruti", National Research Council CNR-IRSA Taranto Italy.

出版信息

Biodivers Data J. 2020 Aug 18;8:e55172. doi: 10.3897/BDJ.8.e55172. eCollection 2020.

Abstract

One of the assets, assigned to the phytoplankton resting stages, is that of serving as the "memory" of the aquatic ecosystems and preserved biodiversity in the course of time. However, an accurate cyst identification proves to be a more difficult and extremely challenging process, even today. In order to gain a better taxonomic coverage of cyst assemblages in the Black Sea, an integrated approach of the classical morphological identification with metabarcoding methods (MySeq sequencing of V7-V9 regions of the 18S rDNA) was applied on thirteen surface sediment samples collected from different sites. A total number of 112 dinoflagellate taxa was detected at the species level and ascribed to 51 genera. In general, it is the molecular analysis that yields a higher number of taxa as compared to those obtained through the morphological taxonomy (66 taxa based on the DNA sequences versus 56 morphologically-identified taxa). Besides, it should be pointed out that the integrated dataset includes 14 potentially toxic dinoflagellate species. Discerned, subsequently, was a good dataset consistency for ten species, followed by some discrepancies as to a number of taxa, identified with one of the methods only, due to specific methodological biases. On the whole, it could be concluded that the combination of morphological and molecular methods is likely to increase the potential for a more reliable taxonomic assessment of phytoplankton diversity in marine sediments which, in turn, proves conclusively the utmost importance of the integrated approach.

摘要

浮游植物休眠期的一个作用是作为水生生态系统的“记忆”,并随着时间推移保护生物多样性。然而,即使在今天,准确识别孢囊仍是一个更加困难且极具挑战性的过程。为了更好地对黑海孢囊组合进行分类覆盖,对从不同地点采集的13个表层沉积物样本采用了经典形态学鉴定与元条形码方法(18S rDNA的V7 - V9区域的MiSeq测序)相结合的综合方法。在物种水平上共检测到112种甲藻分类单元,归属于51个属。总体而言,与通过形态分类学获得的分类单元数量相比,分子分析产生的分类单元数量更多(基于DNA序列的有66个分类单元,而形态学鉴定的有56个分类单元)。此外,应该指出的是,综合数据集包括14种潜在有毒甲藻物种。随后发现,对于10个物种来说数据集一致性良好,不过由于特定的方法偏差,仅用其中一种方法鉴定的一些分类单元存在一些差异。总体而言,可以得出结论,形态学和分子方法的结合可能会增加对海洋沉积物中浮游植物多样性进行更可靠分类评估的潜力,这反过来也确凿地证明了综合方法的至关重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1e5/7447646/6737afd701fa/bdj-08-e55172-g001.jpg

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