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整合基因表达、通路和生物网络分析发现心肌梗死生物标志物。

Myocardial infarction biomarker discovery with integrated gene expression, pathways and biological networks analysis.

机构信息

Princess Al-Jawhara Center of Excellence in Research of Hereditary Disorders (PACER-HD), King Abdulaziz University, Jeddah, Saudi Arabia.

Princess Al-Jawhara Center of Excellence in Research of Hereditary Disorders (PACER-HD), King Abdulaziz University, Jeddah, Saudi Arabia; Department of Genetic Medicine, King Abdulaziz University, Jeddah, Saudi Arabia.

出版信息

Genomics. 2020 Nov;112(6):5072-5085. doi: 10.1016/j.ygeno.2020.09.004. Epub 2020 Sep 11.

Abstract

Myocardial infarction (MI) is the most prevalent coronary heart disease caused by the complex molecular interactions between multiple genes and environment. Here, we aim to identify potential biomarkers for the disease development and for prognosis of MI. We have used gene expression dataset (GSE66360) generated from 51 healthy controls and 49 patients experiencing acute MI and analyzed the differentially expressed genes (DEGs), protein-protein interactions (PPI), gene network-clusters to annotate the candidate pathways relevant to MI pathogenesis. Bioinformatic analysis revealed 810 DEGs. Their functional annotations have captured several MI targeting biological processes and pathways like immune response, inflammation and platelets degranulation. PPI network identify seventeen hub and bottleneck genes, whose involvement in MI was further confirmed by DisGeNET database. OpenTarget Platform reveal unique bottleneck genes as potential target for MI. Our findings identify several potential biomarkers associated with early stage MI providing a new insight into molecular mechanism underlying the disease.

摘要

心肌梗死(MI)是最常见的冠心病,由多个基因与环境之间的复杂分子相互作用引起。在这里,我们旨在确定疾病发展和 MI 预后的潜在生物标志物。我们使用了从 51 名健康对照者和 49 名经历急性 MI 的患者中生成的基因表达数据集(GSE66360),并分析了差异表达基因(DEGs)、蛋白质-蛋白质相互作用(PPI)、基因网络簇,以注释与 MI 发病机制相关的候选途径。生物信息学分析揭示了 810 个 DEGs。它们的功能注释捕获了几个 MI 靶向的生物学过程和途径,如免疫反应、炎症和血小板脱颗粒。PPI 网络确定了 17 个枢纽和瓶颈基因,DisGeNET 数据库进一步证实了这些基因与 MI 的关系。OpenTarget Platform 揭示了独特的瓶颈基因作为 MI 的潜在靶点。我们的研究结果确定了几个与早期 MI 相关的潜在生物标志物,为该疾病的分子机制提供了新的见解。

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