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sp. nov.,一个新的黄单胞菌属物种,包括核桃的致病和非致病菌株。

sp. nov., a new xanthomonad species including pathogenic and non-pathogenic strains of walnut.

机构信息

CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO, Laboratório Associado, Universidade do Porto, Vairão, Portugal.

FCUP, Faculdade de Ciências, Departamento de Biologia, Universidade do Porto, Rua do Campo Alegre s/n, Porto, Portugal.

出版信息

Int J Syst Evol Microbiol. 2020 Dec;70(12):6024-6031. doi: 10.1099/ijsem.0.004386.

Abstract

We describe a novel species isolated from walnut () which comprises non-pathogenic and pathogenic strains on walnut. The isolates, obtained from a single ornamental walnut tree showing disease symptoms, grew on yeast extract-dextrose-carbonate agar as mucoid yellow colonies characteristic of species. Pathogenicity assays showed that while strain CPBF 424 causes disease in walnut, strain CPBF 367 was non-pathogenic on walnut leaves. Biolog GEN III metabolic profiles disclosed some differences between strains CPBF 367 and CPBF 424 and other xanthomonads. Multilocus sequence analysis with seven housekeeping genes (, , , , , , ) grouped these strains in a distinct cluster from pv. and closer to and pv. . Average nucleotide identity (ANI) analysis results displayed similarity values below 93 % to strains. Meanwhile ANI and digital DNA-DNA hybridization similarity values were below 89 and 50 % to non- strains, respectively, revealing that they do not belong to any previously described species. Furthermore, the two strains show over 98 % similarity to each other. Genomic analysis shows that strain CPBF 424 harbours a complete type III secretion system and several type III effector proteins, in contrast with strain CPBF 367, shown to be non-pathogenic in plant bioassays. Taking these data altogether, we propose that strains CPBF 367 and CPBF 424 belong to a new species herein named sp. nov., with CPBF 424 (=LMG 31037=CCOS 1891=NCPPB 4675) as the type strain.

摘要

我们描述了一种从核桃()中分离出的新型物种,它包含了对核桃无害和致病的菌株。这些分离株是从一棵表现出疾病症状的观赏核桃树上获得的,在酵母提取物-葡萄糖-碳酸盐琼脂上生长,呈黏液状黄色菌落,这是 物种的特征。致病性试验表明,虽然 CPBF 424 菌株会导致核桃患病,但 CPBF 367 菌株在核桃叶片上是非致病性的。Biolog GEN III 代谢谱显示 CPBF 367 和 CPBF 424 菌株与其他黄单胞菌之间存在一些差异。使用 7 个看家基因(,,,,,,)的多位点序列分析将这些菌株分为一个与 pv. 和 更接近的独特聚类,而与 和 pv. 较远。平均核苷酸同一性(ANI)分析结果显示,这些菌株与 菌株的相似度值低于 93%。同时,ANI 和数字 DNA-DNA 杂交相似性值分别低于 89%和 50%,与非 菌株不相似,表明它们不属于任何先前描述的 物种。此外,这两个菌株彼此之间的相似度超过 98%。基因组分析表明,CPBF 424 菌株含有完整的 III 型分泌系统和几种 III 型效应蛋白,而 CPBF 367 菌株在植物生物测定中表现为非致病性。综合这些数据,我们提出 CPBF 367 和 CPBF 424 菌株属于一个新的物种,命名为 sp. nov.,其中 CPBF 424(=LMG 31037=CCOS 1891=NCPPB 4675)为模式菌株。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/66bf/8049493/714203a16dd2/ijsem-70-6024-g001.jpg

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