Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.
Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic
mBio. 2020 Sep 15;11(5):e02131-20. doi: 10.1128/mBio.02131-20.
Chemical modifications of viral RNA are an integral part of the viral life cycle and are present in most classes of viruses. To date, more than 170 RNA modifications have been discovered in all types of cellular RNA. Only a few, however, have been found in viral RNA, and the function of most of these has yet to be elucidated. Those few we have discovered and whose functions we understand have a varied effect on each virus. They facilitate RNA export from the nucleus, aid in viral protein synthesis, recruit host enzymes, and even interact with the host immune machinery. The most common methods for their study are mass spectrometry and antibody assays linked to next-generation sequencing. However, given that the actual amount of modified RNA can be very small, it is important to pair meticulous scientific methodology with the appropriate detection methods and to interpret the results with a grain of salt. Once discovered, RNA modifications enhance our understanding of viruses and present a potential target in combating them. This review provides a summary of the currently known chemical modifications of viral RNA, the effects they have on viral machinery, and the methods used to detect them.
病毒 RNA 的化学修饰是病毒生命周期的一个组成部分,存在于大多数类型的病毒中。迄今为止,在所有类型的细胞 RNA 中已经发现了超过 170 种 RNA 修饰。然而,在病毒 RNA 中只发现了少数几种,其中大多数的功能仍有待阐明。我们已经发现的少数几种,其功能我们已经了解,它们对每种病毒都有不同的影响。它们促进 RNA 从核内输出,辅助病毒蛋白合成,招募宿主酶,甚至与宿主免疫机制相互作用。研究它们最常用的方法是与下一代测序相关的质谱和抗体检测。然而,由于修饰 RNA 的实际含量可能非常小,因此重要的是将细致的科学方法与适当的检测方法相结合,并对结果持保留态度。一旦发现,RNA 修饰就会增强我们对病毒的理解,并为对抗病毒提供一个潜在的目标。本文综述了目前已知的病毒 RNA 化学修饰、它们对病毒机制的影响以及用于检测它们的方法。