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47株大肠杆菌环境分离株的全基因组序列

Complete Genome Sequences of 47 Environmental Isolates of Escherichia coli.

作者信息

Breckell Georgia, Silander Olin K

机构信息

School of Natural and Computational Sciences, Massey University, Auckland, New Zealand

School of Natural and Computational Sciences, Massey University, Auckland, New Zealand.

出版信息

Microbiol Resour Announc. 2020 Sep 17;9(38):e00222-20. doi: 10.1128/MRA.00222-20.

DOI:10.1128/MRA.00222-20
PMID:32943554
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7498420/
Abstract

is commonly considered a host-associated bacterium. However, there is evidence that some strains occupy environmental (non-host-associated) niches. Here, we report the complete genomes of 47 environmental isolates. These will be useful for understanding the dynamics of plasmids, phages, and other repetitive genetic elements.

摘要

通常被认为是一种与宿主相关的细菌。然而,有证据表明一些菌株占据环境(非宿主相关)生态位。在此,我们报告了47株环境分离株的完整基因组。这些对于理解质粒、噬菌体和其他重复遗传元件的动态变化将是有用的。

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引用本文的文献

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Efficiency of the synthetic self-splicing RiboJ ribozyme is robust to cis- and trans-changes in genetic background.合成自我拼接 RiboJ 核酶的效率对遗传背景中的顺式和反式变化具有鲁棒性。
Microbiologyopen. 2021 Aug;10(4):e1232. doi: 10.1002/mbo3.1232.

本文引用的文献

1
Niche Preference of in a Peri-Urban Pond Ecosystem.城郊池塘生态系统中[具体生物]的生态位偏好 。(原文中“in a Peri-Urban Pond Ecosystem”前缺少具体生物名称)
Life (Basel). 2021 Sep 28;11(10):1020. doi: 10.3390/life11101020.
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: typing of genome-level order and orientation around ribosomal operons in bacteria.: 细菌中核糖体操纵子周围基因组水平的排序和定向。
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Phylogenetic background and habitat drive the genetic diversification of Escherichia coli.进化背景和生境驱动大肠杆菌的遗传多样化。
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Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
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Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon:一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
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Phylogenetic distribution of traits associated with plant colonization in Escherichia coli.与大肠杆菌植物定植相关特征的系统发育分布。
Environ Microbiol. 2013 Feb;15(2):487-501. doi: 10.1111/j.1462-2920.2012.02852.x. Epub 2012 Aug 30.
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Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species.环境大肠杆菌基因组测序拓展了对模式细菌物种生态和物种形成的理解。
Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):7200-5. doi: 10.1073/pnas.1015622108. Epub 2011 Apr 11.
9
Presence and growth of naturalized Escherichia coli in temperate soils from Lake Superior watersheds.苏必利尔湖流域温带土壤中归化大肠杆菌的存在与生长情况。
Appl Environ Microbiol. 2006 Jan;72(1):612-21. doi: 10.1128/AEM.72.1.612-621.2006.
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Clonal divergence in Escherichia coli as a result of recombination, not mutation.大肠杆菌中的克隆分化是重组而非突变的结果。
Science. 1994 Nov 25;266(5189):1380-3. doi: 10.1126/science.7973728.