微生物组探索者：一个用于微生物群落分析和可视化的 R 包。
MicrobiomeExplorer: an R package for the analysis and visualization of microbial communities.
机构信息
Department of OMNI Bioinformatics, Genentech, Inc, South San Francisco, CA 94080, USA.
Department of Statistics, The Wharton School, University of Pennsylvania, Philadelphia, PA 19104, USA.
出版信息
Bioinformatics. 2021 Jun 9;37(9):1317-1318. doi: 10.1093/bioinformatics/btaa838.
SUMMARY
We developed the MicrobiomeExplorer R package to facilitate the analysis and visualization of microbial communities. The MicrobiomeExplorer R package allows a user to perform typical microbiome analytic workflows and visualize their results, either through the command line or an interactive Shiny application included with the package. In addition to applying common analytical workflows, the application enables automated analysis report generation.
AVAILABILITY AND IMPLEMENTATION
Available at https://github.com/zoecastillo/microbiomeExplorer.
SUPPLEMENTARY INFORMATION
Supplementary data are available at Bioinformatics online.
摘要
我们开发了 MicrobiomeExplorer R 包，以方便微生物群落的分析和可视化。MicrobiomeExplorer R 包允许用户通过命令行或包含在包中的交互式 Shiny 应用程序执行典型的微生物组分析工作流程并可视化其结果。除了应用常见的分析工作流程外，该应用程序还支持自动分析报告生成。
可用性和实现
可在 https://github.com/zoecastillo/microbiomeExplorer 上获得。
补充信息
补充数据可在 Bioinformatics 在线获得。
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