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DNA 和蛋白质在水溶液中普遍存在复杂凝聚现象。

Ubiquity of complex coacervation of DNA and proteins in aqueous solution.

机构信息

School of Physical Sciences, Jawaharlal Nehru University, New Delhi, India.

Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai, India.

出版信息

Soft Matter. 2020 Oct 28;16(41):9525-9533. doi: 10.1039/d0sm00543f.

DOI:10.1039/d0sm00543f
PMID:32966529
Abstract

We report complex coacervation between a primarily hydrophobic protein, elastin, and a strong polyanion DNA (2 kbp) in aqueous and salty solutions at room temperature, 25 °C. The associative interaction at fixed elastin and varying DNA concentration, thereby maintaining a mixing ratio of r = [DNA] : [elastin] = 0.0027 to 0.093, was probed. What distinguishes this study from protein-DNA coacervation reported earlier is that the protein used here was mostly a hydrophobic polyampholyte with low linear charge density, and its complementary polyelectrolyte, DNA, concentration was chosen to be extremely small (1-35 ppm). The interaction profile was found to be strongly hierarchical in the mixing ratio, defined by three distinct regions: (i) Region I (r < 0.02) was defined as the onset of primary binding leading to condensation of DNA; (ii) Region II (0.02 < r < 0.08) indicated secondary binding which led to the formation of fully charge neutralized complexes signaling the onset of coacervation; and (iii) Region III (0.08 < r < 0.12) revealed growth of insoluble complexes of large size facilitating liquid-solid phase separation. The degree of complex coacervation was suppressed in the presence of a monovalent salt implying that screened Coulomb interactions governed the binding. Small angle neutron scattering data attributed an amorphous structure to the coacervates. The elastin-DNA system belongs to a rare class of interacting biopolymers where very weak electrostatic interactions may drive coacervation, thereby implying that coacervation between DNA and proteins may be ubiquitous.

摘要

我们报告了主要疏水蛋白弹性蛋白与强聚阴离子 DNA(2 kbp)在室温下的水溶液和盐溶液中的复杂凝聚。在固定弹性蛋白和变化的 DNA 浓度下,探测到关联相互作用,从而保持混合比 r = [DNA]:[弹性蛋白] = 0.0027 至 0.093。与之前报道的蛋白质-DNA 凝聚相比,这项研究的区别在于,这里使用的蛋白质主要是带有低线性电荷密度的疏水聚两性电解质,其互补的聚电解质 DNA 浓度选择非常小(1-35 ppm)。发现相互作用模式在混合比上具有强烈的层次结构,由三个不同的区域定义:(i)区域 I(r < 0.02)定义为主要结合的开始,导致 DNA 的浓缩;(ii)区域 II(0.02 < r < 0.08)表示二级结合,导致完全中和电荷的复合物的形成,表明凝聚的开始;(iii)区域 III(0.08 < r < 0.12)揭示了不溶性大尺寸复合物的生长,促进了液-固相分离。在存在单价盐的情况下,复杂凝聚的程度受到抑制,这意味着屏蔽的库仑相互作用控制了结合。小角中子散射数据将凝聚物归因于无定形结构。弹性蛋白-DNA 系统属于一类相互作用的生物聚合物,其中非常弱的静电相互作用可能驱动凝聚,从而暗示 DNA 和蛋白质之间的凝聚可能无处不在。

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