School of Physical Sciences, Jawaharlal Nehru University, New Delhi, India.
Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai, India.
Soft Matter. 2020 Oct 28;16(41):9525-9533. doi: 10.1039/d0sm00543f.
We report complex coacervation between a primarily hydrophobic protein, elastin, and a strong polyanion DNA (2 kbp) in aqueous and salty solutions at room temperature, 25 °C. The associative interaction at fixed elastin and varying DNA concentration, thereby maintaining a mixing ratio of r = [DNA] : [elastin] = 0.0027 to 0.093, was probed. What distinguishes this study from protein-DNA coacervation reported earlier is that the protein used here was mostly a hydrophobic polyampholyte with low linear charge density, and its complementary polyelectrolyte, DNA, concentration was chosen to be extremely small (1-35 ppm). The interaction profile was found to be strongly hierarchical in the mixing ratio, defined by three distinct regions: (i) Region I (r < 0.02) was defined as the onset of primary binding leading to condensation of DNA; (ii) Region II (0.02 < r < 0.08) indicated secondary binding which led to the formation of fully charge neutralized complexes signaling the onset of coacervation; and (iii) Region III (0.08 < r < 0.12) revealed growth of insoluble complexes of large size facilitating liquid-solid phase separation. The degree of complex coacervation was suppressed in the presence of a monovalent salt implying that screened Coulomb interactions governed the binding. Small angle neutron scattering data attributed an amorphous structure to the coacervates. The elastin-DNA system belongs to a rare class of interacting biopolymers where very weak electrostatic interactions may drive coacervation, thereby implying that coacervation between DNA and proteins may be ubiquitous.
我们报告了主要疏水蛋白弹性蛋白与强聚阴离子 DNA(2 kbp)在室温下的水溶液和盐溶液中的复杂凝聚。在固定弹性蛋白和变化的 DNA 浓度下,探测到关联相互作用,从而保持混合比 r = [DNA]:[弹性蛋白] = 0.0027 至 0.093。与之前报道的蛋白质-DNA 凝聚相比,这项研究的区别在于,这里使用的蛋白质主要是带有低线性电荷密度的疏水聚两性电解质,其互补的聚电解质 DNA 浓度选择非常小(1-35 ppm)。发现相互作用模式在混合比上具有强烈的层次结构,由三个不同的区域定义:(i)区域 I(r < 0.02)定义为主要结合的开始,导致 DNA 的浓缩;(ii)区域 II(0.02 < r < 0.08)表示二级结合,导致完全中和电荷的复合物的形成,表明凝聚的开始;(iii)区域 III(0.08 < r < 0.12)揭示了不溶性大尺寸复合物的生长,促进了液-固相分离。在存在单价盐的情况下,复杂凝聚的程度受到抑制,这意味着屏蔽的库仑相互作用控制了结合。小角中子散射数据将凝聚物归因于无定形结构。弹性蛋白-DNA 系统属于一类相互作用的生物聚合物,其中非常弱的静电相互作用可能驱动凝聚,从而暗示 DNA 和蛋白质之间的凝聚可能无处不在。