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对物种多样性的系统发育见解。

Phylogenetic insights into the diversity of species.

作者信息

Siddaramappa Shivakumara, Narjala Anushree, Viswanathan Vandana, Maliye Chaitra, Lakshminarayanan Raghavendran

机构信息

Institute of Bioinformatics and Applied Biotechnology, Biotech Park, Electronic City, Bengaluru 560100, Karnataka, India.

出版信息

Access Microbiol. 2019 May 3;1(3):e000019. doi: 10.1099/acmi.0.000019. eCollection 2019.

Abstract

The genus was formally established in 1994 and contains 112 species with validly published names. Most of these species are yellow or orange coloured, and contain a flexirubin-type pigment. The genomes of 83 of these 112 species have been sequenced in view of their importance in clinical microbiology and potential applications in biotechnology. The National Center for Biotechnology Information taxonomy browser lists 1415 strains as members of the genus , of which the genomes of 94 strains have been sequenced. In this study, by comparing the 16S rDNA and the deduced proteome sequences, at least 20 of these strains have been proposed to represent novel species of the genus . Furthermore, a yellow-coloured bacterium isolated from dry soil in the USA (and identified as sp. strain B-14859) has also been reconciled as a novel member of the genus based on the analysis of 16S rDNA sequences and the presence of flexirubin. Yet another bacterium (isolated from a water sample collected in the Western Ghats of India and identified as sp. strain WG4) was also found to represent a novel species. These proposals need to be validated using polyphasic taxonomic approaches.

摘要

该属正式建立于1994年,包含112个具有有效发表名称的物种。这些物种大多为黄色或橙色,并含有一种柔韧红素类色素。鉴于其在临床微生物学中的重要性以及在生物技术中的潜在应用,这112个物种中的83个物种的基因组已被测序。美国国家生物技术信息中心分类浏览器列出1415个菌株为该属成员,其中94个菌株的基因组已被测序。在本研究中,通过比较16S rDNA和推导的蛋白质组序列,已提出这些菌株中至少20个代表该属的新物种。此外,基于16S rDNA序列分析和柔韧红素的存在,从美国干燥土壤中分离出的一种黄色细菌(鉴定为sp.菌株B-14859)也被确认为该属的一个新成员。另一种细菌(从印度西高止山脉采集的水样中分离出来,鉴定为sp.菌株WG4)也被发现代表一个新物种。这些提议需要使用多相分类方法进行验证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e715/7471780/d0abfdbe47ed/acmi-1-019-g001.jpg

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