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……中辅助基因调控位点的遗传多样性与流行病学

Genetic diversity and epidemiology of accessory gene regulator loci in .

作者信息

Okada Yuta, Okugawa Shu, Ikeda Mahoko, Kobayashi Tatsuya, Saito Ryoichi, Higurashi Yoshimi, Moriya Kyoji

机构信息

Department of Infectious Diseases, The University of Tokyo Hospital, Bunkyo-ku, Tokyo, Japan.

Department of Infection Control and Prevention, The University of Tokyo Hospital, Bunkyo-ku, Tokyo, Japan.

出版信息

Access Microbiol. 2020 May 14;2(7):acmi000134. doi: 10.1099/acmi.0.000134. eCollection 2020.

Abstract

Quorum sensing is known to regulate bacterial virulence, and the accessory gene regulator () loci is one of the genetic loci responsible for its regulation. Recent reports examining show that two loci, and regulate toxin production, but the diversity of loci and their epidemiology is unknown. In our study, analysis was performed to research genetic diversity of , and isolates from clinical samples underwent multilocus sequence typing (MLST) and PCR analysis of loci. To reveal the distribution of among different strains, phylogenetic analysis was also performed. In our analysis, two different subtypes, named and , were found in which were previously reported. PCR analysis of 133 . isolates showed that 131 strains had , 61 strains had , and 26 strains had was mainly found in clade 1 or clade 2 organisms, whereas was only found in clade 4. With rare exception, -negative sequence types (STs) belonged to clade C-Ⅰ and C-Ⅲ, and one clade 4 strain had . Our study revealed subtypes of not previously recognized, and the distribution of several loci in . These findings provide a foundation for further functional and clinical research of the loci.

摘要

群体感应已知可调节细菌毒力,而辅助基因调节子()位点是负责其调节的遗传位点之一。最近关于的研究报告表明,两个位点,即和调节毒素产生,但位点的多样性及其流行病学情况尚不清楚。在我们的研究中,进行了分析以研究的遗传多样性,并且对临床样本中的分离株进行多位点序列分型(MLST)和位点的PCR分析。为了揭示在不同菌株中的分布情况,还进行了系统发育分析。在我们的分析中,在先前报道的中发现了两种不同的亚型,命名为和。对133株分离株进行的PCR分析表明,131株有,61株有,26株有主要存在于进化枝1或进化枝2的生物体中,而仅在进化枝4中发现。除极少数例外,阴性序列类型(STs)属于进化枝C -Ⅰ和C -Ⅲ,并且一株进化枝4菌株有。我们的研究揭示了先前未识别的亚型,以及几个位点在中的分布。这些发现为进一步对位点进行功能和临床研究奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d469/7497831/63e983f7ea0f/acmi-2-134-g001.jpg

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