Fu Yuying, Zhang Lishan, Wang Guibin, Lin Yuexu, Ramanathan Srinivasan, Yang Guidi, Lin Wenxiong, Lin Xiangmin
Fujian Provincial Key Laboratory of Agroecological Processing and Safety Monitoring, School of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, China.
Key Laboratory of Crop Ecology and Molecular Physiology (Fujian Agriculture and Forestry University), Fujian Province University, Fuzhou, China.
Front Microbiol. 2020 Sep 9;11:577376. doi: 10.3389/fmicb.2020.577376. eCollection 2020.
is an aquatic pathogen of freshwater fish. The emergence of widespread antimicrobial-resistance strains of this pathogen has caused increasing rates of fish infections. Our previous research reported that , a LysR-type transcriptional regulator (LTTR), negatively regulated furazolidone (FZ) resistance. Although, it's intrinsic regulatory mechanism is still unclear. In this study, a data-independent acquisition (DIA) quantitative proteomics method was used to compare the differentially expressed proteins (DEPs) between the Δ and wild-type strain under FZ treatment. When compared to the control, a total of 594 DEPs were identified in Δ. Among which, 293 and 301 proteins were substantially increased and decreased in abundance, respectively. Bioinformatics analysis showed that several biological pathways such as the secretion system and protein transport were mainly involved in FZ resistance. Subsequently, the antibiotics susceptibility assays of several gene deletion strains identified from the proteomics results showed that YeeY may regulate some important genes such as , , , and , which affects the FZ resistance in . Furthermore, 34 antimicrobial resistance genes (ARGs) from the bacterial drug resistance gene database (CARD) were found to be directly or indirectly regulated by YeeY. A subsequent assay of several ARGs mutants showed that Δ increased the susceptibility of to FZ, while Δ and Δ decreased the susceptibility rate. Finally, the chromatin immunoprecipitation (ChIP) PCR and an electrophoretic mobility shift assay (EMSA) have revealed that the genes such as and were directly and transcriptionally regulated by YeeY. Taken together, our findings demonstrated that YeeY may participate in antimicrobial resistance of to FZ, which provides a new target for the development of novel antimicrobial agents in the future.
是淡水鱼的一种水生病原体。这种病原体广泛存在的抗菌耐药菌株的出现导致鱼类感染率不断上升。我们之前的研究报道称,一种LysR型转录调节因子(LTTR)负向调节呋喃唑酮(FZ)耐药性。然而,其内在调节机制仍不清楚。在本研究中,采用数据非依赖采集(DIA)定量蛋白质组学方法比较FZ处理下Δ菌株和野生型菌株之间的差异表达蛋白(DEP)。与对照相比,在Δ菌株中总共鉴定出594个DEP。其中,分别有293个和301个蛋白质的丰度显著增加和降低。生物信息学分析表明,分泌系统和蛋白质转运等几种生物学途径主要参与FZ耐药性。随后,对从蛋白质组学结果中鉴定出的几种基因缺失菌株进行抗生素敏感性试验,结果表明YeeY可能调节一些重要基因,如、、、和,这些基因影响对FZ的耐药性。此外,发现细菌耐药基因数据库(CARD)中的34个抗菌耐药基因(ARG)直接或间接受到YeeY的调节。随后对几种ARG突变体的试验表明,Δ增加了对FZ的敏感性,而Δ和Δ降低了敏感率。最后,染色质免疫沉淀(ChIP)PCR和电泳迁移率变动分析(EMSA)表明,和等基因直接受到YeeY的转录调控。综上所述,我们的研究结果表明YeeY可能参与对FZ的抗菌耐药性,这为未来新型抗菌药物的开发提供了一个新靶点。