Bayer AG, Pharmaceuticals, R&D, Digital Technologies, Computational Molecular Design, 42096, Wuppertal, Germany.
Department of Chemical Engineering, Columbia University, New York, NY, 10027, USA.
J Comput Aided Mol Des. 2021 Apr;35(4):557-586. doi: 10.1007/s10822-020-00346-6. Epub 2020 Oct 9.
Atomistic simulations have become an invaluable tool for industrial applications ranging from the optimization of protein-ligand interactions for drug discovery to the design of new materials for energy applications. Here we review recent advances in the use of machine learning (ML) methods for accelerated simulations based on a quantum mechanical (QM) description of the system. We show how recent progress in ML methods has dramatically extended the applicability range of conventional QM-based simulations, allowing to calculate industrially relevant properties with enhanced accuracy, at reduced computational cost, and for length and time scales that would have otherwise not been accessible. We illustrate the benefits of ML-accelerated atomistic simulations for industrial R&D processes by showcasing relevant applications from two very different areas, drug discovery (pharmaceuticals) and energy materials. Writing from the perspective of both a molecular and a materials modeling scientist, this review aims to provide a unified picture of the impact of ML-accelerated atomistic simulations on the pharmaceutical, chemical, and materials industries and gives an outlook on the exciting opportunities that could emerge in the future.
原子模拟已经成为一种非常有价值的工具,可应用于从优化药物发现中的蛋白质-配体相互作用到设计能源应用新材料等各种工业领域。在这里,我们回顾了基于系统量子力学(QM)描述的使用机器学习(ML)方法加速模拟的最新进展。我们展示了 ML 方法的最新进展如何极大地扩展了传统基于 QM 的模拟的适用性范围,使得能够以增强的准确性、降低的计算成本和原本无法访问的长度和时间尺度来计算工业相关的性质。我们通过展示来自两个非常不同领域的药物发现(制药)和能源材料的相关应用,说明了 ML 加速原子模拟对工业研发过程的好处。作为一名分子和材料建模科学家,本文旨在提供一个统一的视角,说明 ML 加速原子模拟对制药、化学和材料行业的影响,并展望未来可能出现的令人兴奋的机会。