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基于CRISPR的新型冠状病毒快速检测方法

CRISPR-based assays for rapid detection of SARS-CoV-2.

作者信息

Javalkote Vivek S, Kancharla Nagesh, Bhadra Bhaskar, Shukla Manish, Soni Badrish, Sapre Ajit, Goodin Michael, Bandyopadhyay Anindya, Dasgupta Santanu

机构信息

Reliance Industries Ltd, R&D-Synthetic Biology Group, Reliance Corporate Park, Navi Mumbai, India.

Department of Plant Pathology, University of Kentucky, Lexington, KY 40546, USA.

出版信息

Methods. 2022 Jul;203:594-603. doi: 10.1016/j.ymeth.2020.10.003. Epub 2020 Oct 10.

Abstract

COVID-19 pandemic posed an unprecedented threat to global public health and economies. There is no effective treatment of the disease, hence, scaling up testing for rapid diagnosis of SARS-CoV-2 infected patients and quarantine them from healthy individuals is one the best strategies to curb the pandemic. Establishing globally accepted easy-to-access diagnostic tests is extremely important to understanding the epidemiology of the present pandemic. While nucleic acid based tests are considered to be more sensitive with respect to serological tests but present gold standard qRT-PCR-based assays possess limitations such as low sample throughput, requirement for sophisticated reagents and instrumentation. To overcome these shortcomings, recent efforts of incorporating LAMP-based isothermal detection, and minimizing the number of reagents required are on rise. CRISPR based novel techniques, when merge with isothermal and allied technologies, promises to provide sensitive and rapid detection of SARS-CoV-2 nucleic acids. Here, we discuss and present compilation of state-of-the-art detection techniques for COVID-19 using CRISPR technology which has tremendous potential to transform diagnostics and epidemiology.

摘要

新冠疫情对全球公共卫生和经济构成了前所未有的威胁。目前尚无针对该疾病的有效治疗方法,因此,扩大检测以快速诊断感染新冠病毒的患者,并将他们与健康个体隔离,是遏制疫情的最佳策略之一。建立全球公认的易于获取的诊断测试对于了解当前疫情的流行病学情况极为重要。虽然基于核酸的检测相对于血清学检测被认为更敏感,但目前基于金标准定量逆转录聚合酶链反应(qRT-PCR)的检测方法存在局限性,如样本通量低、需要复杂的试剂和仪器。为克服这些缺点,最近将基于环介导等温扩增技术(LAMP)的等温检测方法纳入并减少所需试剂数量的努力正在增加。基于成簇规律间隔短回文重复序列(CRISPR)的新技术与等温及相关技术相结合,有望实现对新冠病毒核酸的灵敏、快速检测。在此,我们讨论并介绍了利用CRISPR技术对新冠病毒进行检测的最新技术汇编,该技术在改变诊断和流行病学方面具有巨大潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac7c/7546951/18b1c596c428/gr1_lrg.jpg

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