Department of Biological Sciences, Inha University, Incheon, 22212, Republic of Korea.
Center for Molecular and Cell Biology, Inha University, Incheon, 22212, Republic of Korea.
Sci Data. 2020 Oct 13;7(1):349. doi: 10.1038/s41597-020-00695-9.
A high number of viral metagenomes have revealed countless genomes of putative bacteriophages that have not yet been identified due to limitations in bacteriophage cultures. However, most virome studies have been focused on marine or gut environments, thereby leaving the viral community structure of freshwater lakes unclear. Because the lakes located around the globe have independent ecosystems with unique characteristics, viral community structures are also distinctive but comparable. Here, we present data on viral metagenomes that were seasonally collected at a depth of 1 m from Lake Soyang, the largest freshwater reservoir in South Korea. Through shotgun metagenome sequencing using the Illumina MiSeq platform, 3.08 to 5.54-Gbps of reads per virome were obtained. To predict the viral genome sequences within Lake Soyang, contigs were constructed and 648 to 1,004 putative viral contigs were obtained per sample. We expect that both viral metagenome reads and viral contigs would contribute in comparing and understanding of viral communities among different freshwater lakes depending on seasonal changes.
大量的病毒宏基因组研究揭示了无数尚未被鉴定的假定噬菌体基因组,这是由于噬菌体培养的局限性所致。然而,大多数病毒组研究都集中在海洋或肠道环境,因此,淡水湖泊中的病毒群落结构尚不清楚。由于全球范围内的湖泊都具有独立的生态系统和独特的特征,因此病毒群落结构也具有独特性,但具有可比性。在这里,我们提供了在韩国最大的淡水水库藻泽湖从 1 米深处按季节采集的病毒宏基因组数据。通过使用 Illumina MiSeq 平台进行的 shotgun 宏基因组测序,每个病毒组获得了 3.08 到 5.54-Gbps 的读长。为了预测藻泽湖中病毒基因组序列,构建了 contigs,每个样本获得了 648 到 1004 个假定的病毒 contigs。我们预计,病毒宏基因组读数和病毒 contigs 将有助于比较和理解不同淡水湖泊之间的病毒群落,这取决于季节变化。