从冷藏真空包装肉中分离出的两株系统发育不同的产气梭菌菌株CM001和CM004的基因组序列草图
Draft Genome Sequences of Two Phylogenetically Distinct Clostridium gasigenes Strains, CM001 and CM004, Isolated from Chilled Vacuum-Packed Meat.
作者信息
Wambui Joseph, Cernela Nicole, Stevens Marc J A, Corti Sabrina, Stephan Roger
机构信息
Institute for Food Safety and Hygiene, Vetsuisse Faculty, University of Zurich, Zurich, Switzerland
Institute for Food Safety and Hygiene, Vetsuisse Faculty, University of Zurich, Zurich, Switzerland.
出版信息
Microbiol Resour Announc. 2020 Oct 15;9(42):e01128-20. doi: 10.1128/MRA.01128-20.
Abstract
We present the draft genome sequences of strains CM001 and CM004. The genomes are 4,147,089 and 4,191,074 bp with GC contents of 28.7% and 28.8%, respectively. Although both strains belong to the same species, whole-genome sequence-based analyses reveal that the strains are phylogenetically distinct.
摘要
我们展示了菌株CM001和CM004的基因组序列草图。这两个基因组分别为4,147,089和4,191,074碱基对，GC含量分别为28.7%和28.8%。尽管这两个菌株属于同一物种，但基于全基因组序列的分析表明，它们在系统发育上是不同的。
相似文献
1
Draft Genome Sequences of Two Phylogenetically Distinct Clostridium gasigenes Strains, CM001 and CM004, Isolated from Chilled Vacuum-Packed Meat.从冷藏真空包装肉中分离出的两株系统发育不同的产气梭菌菌株CM001和CM004的基因组序列草图
Microbiol Resour Announc. 2020 Oct 15;9(42):e01128-20. doi: 10.1128/MRA.01128-20.
2
Comparative Genome Analysis and Phenotypic Characterization of CGAS001 Isolated From Chilled Vacuum-Packed Lamb Meat.从冷藏真空包装羊肉中分离出的CGAS001的比较基因组分析与表型特征鉴定
Front Microbiol. 2020 Aug 24;11:2048. doi: 10.3389/fmicb.2020.02048. eCollection 2020.
3
Draft Genome Sequences of Two Clostridium algidicarnis Strains Isolated from Meat Juice Samples of Chilled Vacuum-Packed Lamb Meat.从冷藏真空包装羊肉的肉汁样本中分离出的两株嗜冷肉梭菌的基因组序列草图
Microbiol Resour Announc. 2020 Nov 5;9(45):e00983-20. doi: 10.1128/MRA.00983-20.
4
Clostridium gasigenes sp. nov., a psychrophile causing spoilage of vacuum-packed meat.产气梭菌新种，一种导致真空包装肉类腐败的嗜冷菌。
Int J Syst Evol Microbiol. 2000 Jan;50 Pt 1:107-118. doi: 10.1099/00207713-50-1-107.
5
Sources of psychrophilic and psychrotolerant clostridia causing spoilage of vacuum-packed chilled meats, as determined by PCR amplification procedure.通过 PCR 扩增程序确定导致真空包装冷藏肉腐败的嗜冷和耐冷梭菌的来源。
J Appl Microbiol. 2009 Jul;107(1):178-86. doi: 10.1111/j.1365-2672.2009.04193.x. Epub 2009 Mar 3.
6
Involvement of Clostridium gasigenes and C. algidicarnis in 'blown pack' spoilage of Brazilian vacuum-packed beef.产气荚膜梭菌和产丁酸梭菌与巴西真空包装牛肉“胀包”腐败的关系。
Int J Food Microbiol. 2011 Aug 15;148(3):156-63. doi: 10.1016/j.ijfoodmicro.2011.05.016. Epub 2011 May 27.
7
Draft Genome Sequence of Clostridium estertheticum CEST001, Belonging to a Novel Subspecies of , Isolated from Chilled Vacuum-Packed Lamb Meat Imported to Switzerland.从进口到瑞士的冷藏真空包装羊肉中分离得到的属于梭状芽胞杆菌新亚种的酯丁酸梭菌CEST001的基因组序列草图
Microbiol Resour Announc. 2020 Aug 13;9(33):e00806-20. doi: 10.1128/MRA.00806-20.
8
The abattoir source of culturable psychrophilic Clostridium spp. causing 'blown pack' spoilage of vacuum-packed chilled venison.导致真空包装冷藏鹿肉出现“胀袋”变质的可培养嗜冷梭菌的屠宰场来源。
J Appl Microbiol. 2002;93(5):817-24. doi: 10.1046/j.1365-2672.2002.01757.x.
9
PCR detection of psychrophilic Clostridium spp. causing 'blown pack' spoilage of vacuum-packed chilled meats.用于检测导致真空包装冷藏肉“胀袋”变质的嗜冷梭菌属的聚合酶链反应（PCR）检测
J Appl Microbiol. 2003;94(3):515-22. doi: 10.1046/j.1365-2672.2003.01859.x.
10
Detection of psychrophilic and psychrotolerant Clostridium spp. in chilled fresh vacuum-packed meat using different PCR methods.使用不同的聚合酶链式反应（PCR）方法检测冷藏新鲜真空包装肉中的嗜冷和耐冷梭菌属细菌。
FEMS Microbiol Lett. 2016 Jan;363(1):fnv218. doi: 10.1093/femsle/fnv218. Epub 2015 Nov 11.
引用本文的文献
1
Occurrence of genes encoding spore germination in species that cause meat spoilage.导致肉类腐败的 种属中存在编码孢子萌发的基因。
Microb Genom. 2022 Feb;8(2). doi: 10.1099/mgen.0.000767.
2
Whole Genome Sequence-Based Identification of Complex Strains Supports the Need for Taxonomic Reclassification Within the Species .基于全基因组序列的复杂菌株鉴定支持物种内进行分类重新分类的必要性。
Front Microbiol. 2021 Sep 13;12:727022. doi: 10.3389/fmicb.2021.727022. eCollection 2021.
本文引用的文献
1
Comparative Genome Analysis and Phenotypic Characterization of CGAS001 Isolated From Chilled Vacuum-Packed Lamb Meat.从冷藏真空包装羊肉中分离出的CGAS001的比较基因组分析与表型特征鉴定
Front Microbiol. 2020 Aug 24;11:2048. doi: 10.3389/fmicb.2020.02048. eCollection 2020.
2
Detection of Psychrophilic spp. Causing "Blown Pack" Spoilage in Meat Juice Samples from Chilled Vacuum-Packed Beef and Lamb Meat Imported from Different Countries to Switzerland.检测来自不同国家进口到瑞士的冷藏真空包装牛肉和羊肉肉汁样品中导致“胀包”变质的嗜冷 spp.
J Food Prot. 2020 Jan;83(1):56-59. doi: 10.4315/0362-028X.JFP-19-321.
3
A large-scale evaluation of algorithms to calculate average nucleotide identity.计算平均核苷酸一致性的算法的大规模评估。
Antonie Van Leeuwenhoek. 2017 Oct;110(10):1281-1286. doi: 10.1007/s10482-017-0844-4. Epub 2017 Feb 15.
4
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies.推出 EzBioCloud：一个统一分类学的 16S rRNA 基因序列和全基因组组装数据库。
Int J Syst Evol Microbiol. 2017 May;67(5):1613-1617. doi: 10.1099/ijsem.0.001755. Epub 2017 May 30.
5
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
6
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.RASTtk：一种用于构建定制注释管道和批量注释基因组的RAST算法的模块化可扩展实现。
Sci Rep. 2015 Feb 10;5:8365. doi: 10.1038/srep08365.
7
Genome sequence-based species delimitation with confidence intervals and improved distance functions.基于基因组序列的具有置信区间和改进距离函数的物种界定。
BMC Bioinformatics. 2013 Feb 21;14:60. doi: 10.1186/1471-2105-14-60.
8
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
9
Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation.迈向用于（宏）基因组注释的标准操作程序（SOP）在线存储库。
OMICS. 2008 Jun;12(2):137-41. doi: 10.1089/omi.2008.0017.
10
Clostridium gasigenes sp. nov., a psychrophile causing spoilage of vacuum-packed meat.产气梭菌新种，一种导致真空包装肉类腐败的嗜冷菌。
Int J Syst Evol Microbiol. 2000 Jan;50 Pt 1:107-118. doi: 10.1099/00207713-50-1-107.
Zotero 插件