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密歇根大学游动孢子真真菌库(CZEUM):引入一个新的条形码和培养物储存库。

The Collection of Zoosporic Eufungi at the University of Michigan (CZEUM): introducing a new repository of barcoded and cultures.

作者信息

Simmons D Rabern, Bonds Anne E, Castillo Buck T, Clemons Rebecca A, Glasco Alex D, Myers Jillian M, Thapa Natasha, Letcher Peter M, Powell Martha J, Longcore Joyce E, James Timothy Y

机构信息

Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109 USA.

Department of Biological Sciences, The University of Alabama, Tuscaloosa, AL 35487 USA.

出版信息

IMA Fungus. 2020 Oct 6;11:20. doi: 10.1186/s43008-020-00041-z. eCollection 2020.

Abstract

We formed the Collection of Zoosporic Eufungi at the University of Michigan (CZEUM) in 2018 as a cryopreserved fungal collection consolidating the University of Maine Culture Collection (UMCC, or JEL), the University of Alabama Chytrid Culture Collection (UACCC), and additional zoosporic eufungal accessions. The CZEUM is established as a community resource containing 1045 cryopreserved cultures of , , and , with 52 cultures being ex-type strains. We molecularly characterized 431 cultures by amplifying the majority of the rDNA operon in a single reaction, yielding an average fragment length of 4739 bp. We sequenced multiplexed samples with an Oxford Nanopore Technology MinION device and software, and demonstrate the method is accurate by producing sequences identical to published Sanger sequences. With these data, we generated a phylogeny of 882 zoosporic eufungi strains to produce the most comprehensive phylogeny of these taxa to date. The CZEUM is thus largely characterized by molecular data, which can guide instructors and researchers on future studies of these organisms. Cultures from the CZEUM can be purchased through an online portal.

摘要

2018年,我们在密歇根大学组建了游动孢子真真菌保藏中心(CZEUM),这是一个冷冻保藏的真菌保藏库,整合了缅因大学培养物保藏中心(UMCC,或JEL)、阿拉巴马大学壶菌培养物保藏中心(UACCC)以及其他游动孢子真真菌种质。CZEUM作为一种社区资源而设立,保存有1045份冷冻保藏的、 、 和 的培养物,其中52份培养物为模式菌株。我们通过在单一反应中扩增大部分rDNA操纵子对431份培养物进行了分子特征分析,得到的平均片段长度为4739 bp。我们使用牛津纳米孔技术MinION设备和软件对多重样品进行了测序,并通过生成与已发表的桑格测序结果相同的序列证明了该方法的准确性。利用这些数据,我们构建了882株游动孢子真真菌菌株的系统发育树,以产生迄今为止这些分类群最全面的系统发育。因此,CZEUM在很大程度上以分子数据为特征,这些数据可以为教师和研究人员对这些生物的未来研究提供指导。CZEUM的培养物可通过在线门户购买。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce98/7537106/fd9533f0e12b/43008_2020_41_Fig1_HTML.jpg

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