School of Biological Sciences, University of the Punjab, Lahore, Pakistan.
Department of Zoology, University of the Punjab, Lahore, Pakistan.
J Biomol Struct Dyn. 2022 Mar;40(4):1813-1829. doi: 10.1080/07391102.2020.1833760. Epub 2020 Oct 19.
Despite the continued global spread of the current COVID-19 pandemic, the nonavailability of a vaccine or targeted drug against this disease is still prevailing. The most established mechanism of viral entry into the body is considered to be via angiotensin-converting enzyme 2 (ACE2) acting as a receptor for viral spike protein thereby facilitating its entry in the cell. However, ACE2 is also involved in providing the protection from severe pathological changes. This article provides a computational and bioinformatics-based analysis of ACE2 with an objective of providing further insight into the earnest efforts to determine its true position in COVID-19 pathology. The results of this study show that ACE2 has strikingly low expression in healthy human lung tissue and was absent from the list of differentially expressed genes. However, when transcription factors were analyzed, we found a significant upregulation of FOS and downregulation of FOXO4 and FOXP2. Moreover, the miRNA prediction analysis revealed that miR-1246, whose upregulation has been experimentally established to be a cause of acute respiratory distress syndrome (ARDS), was found to be targeting the coding DNA sequence (CDS) of ACE2. This study presents a wide range of potentially important transcription factors as well as miRNA targets associated with ACE2 which can be potentially used for drug designing amid this challenging pandemic situation.Communicated by Ramaswamy H. Sarma.
尽管当前 COVID-19 大流行仍在全球范围内持续传播,但针对这种疾病的疫苗或靶向药物仍然无法获得。病毒进入人体的最主要机制被认为是通过血管紧张素转换酶 2(ACE2)作为病毒刺突蛋白的受体,从而促进其进入细胞。然而,ACE2 也参与提供对严重病理变化的保护。本文通过计算和生物信息学方法对 ACE2 进行了分析,旨在深入了解确定其在 COVID-19 病理学中的真正地位的认真努力。这项研究的结果表明,ACE2 在健康的人肺组织中的表达水平极低,并且不在差异表达基因列表中。然而,当分析转录因子时,我们发现 FOS 的表达显著上调,而 FOXO4 和 FOXP2 的表达下调。此外,miRNA 预测分析表明,miR-1246 的上调已被实验证实是急性呼吸窘迫综合征(ARDS)的原因,而 miR-1246 被发现靶向 ACE2 的编码 DNA 序列(CDS)。这项研究提出了一系列与 ACE2 相关的潜在重要转录因子和 miRNA 靶标,这些靶标可在这一具有挑战性的大流行情况下用于药物设计。由 Ramaswamy H. Sarma 交流。