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用于蛋白质、多糖和核酸中不稳定位点的同核多维 NMR 相关的灵敏度增强。

Sensitivity enhancement of homonuclear multidimensional NMR correlations for labile sites in proteins, polysaccharides, and nucleic acids.

机构信息

Department of Chemical and Biological Physics, Weizmann Institute of Science, 7610001, Rehovot, Israel.

Bruker UK Ltd., Banner Lane, Coventry, UK.

出版信息

Nat Commun. 2020 Oct 21;11(1):5317. doi: 10.1038/s41467-020-19108-x.

DOI:10.1038/s41467-020-19108-x
PMID:33087707
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7577996/
Abstract

Multidimensional TOCSY and NOESY are central experiments in chemical and biophysical NMR. Limited efficiencies are an intrinsic downside of these methods, particularly when targeting labile sites. This study demonstrates that the decoherence imparted on these protons through solvent exchanges can, when suitably manipulated, lead to dramatic sensitivity gains per unit time in the acquisition of these experiments. To achieve this, a priori selected frequencies are encoded according to Hadamard recipes, while concurrently subject to looped selective inversion or selective saturation procedures. Suitable processing then leads to protein, oligosaccharide and nucleic acid cross-peak enhancements of ≈200-1000% per scan, in measurements that are ≈10-fold faster than conventional counterparts. The extent of these gains will depend on the solvent exchange and relaxation rates of the targeted sites; these gains also benefit considerably from the spectral resolution provided by ultrahigh fields, as corroborated by NMR experiments at 600 MHz and 1 GHz. The mechanisms underlying these experiments' enhanced efficiencies are analyzed on the basis of three-way polarization transfer interplays between the water, labile and non-labile protons, and the experimental results are rationalized using both analytical and numerical derivations. Limitations as well as further extensions of the proposed methods, are also discussed.

摘要

多维 TOCSY 和 NOESY 是化学和生物物理 NMR 中的核心实验。这些方法的效率有限是其内在的缺点,特别是在针对不稳定部位时。本研究表明,通过溶剂交换对这些质子施加的去相干作用,如果适当地进行操作,可以在获取这些实验时,在单位时间内显著提高灵敏度。为了实现这一点,根据 Hadamard 配方对预先选择的频率进行编码,同时进行循环选择性反转或选择性饱和处理。适当的处理会导致蛋白质、寡糖和核酸的交叉峰增强 ≈200-1000%/次扫描,测量速度比传统方法快约 10 倍。这些增益的程度将取决于目标部位的溶剂交换和弛豫速率;这些增益还会从超高场提供的光谱分辨率中获益匪浅,这在 600 MHz 和 1 GHz 的 NMR 实验中得到了证实。基于水、不稳定和稳定质子之间的三向极化转移相互作用,分析了这些实验效率提高的机制,并使用解析和数值推导对实验结果进行了合理化解释。还讨论了所提出方法的局限性和进一步扩展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d2bf/7577996/0e75aa40f344/41467_2020_19108_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d2bf/7577996/b4c8f0bdee25/41467_2020_19108_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d2bf/7577996/39d8e41a50ce/41467_2020_19108_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d2bf/7577996/0f29fc0c4b25/41467_2020_19108_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d2bf/7577996/1e9f1c0d35a0/41467_2020_19108_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d2bf/7577996/9164e97ad912/41467_2020_19108_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d2bf/7577996/0e75aa40f344/41467_2020_19108_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d2bf/7577996/b4c8f0bdee25/41467_2020_19108_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d2bf/7577996/39d8e41a50ce/41467_2020_19108_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d2bf/7577996/0f29fc0c4b25/41467_2020_19108_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d2bf/7577996/1e9f1c0d35a0/41467_2020_19108_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d2bf/7577996/9164e97ad912/41467_2020_19108_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d2bf/7577996/0e75aa40f344/41467_2020_19108_Fig6_HTML.jpg

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