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印度rs2285666多态性与COVID-19空间分布的遗传关联。

Genetic Association of rs2285666 Polymorphism With COVID-19 Spatial Distribution in India.

作者信息

Srivastava Anshika, Bandopadhyay Audditiya, Das Debashurti, Pandey Rudra Kumar, Singh Vanya, Khanam Nargis, Srivastava Nikhil, Singh Prajjval Pratap, Dubey Pavan Kumar, Pathak Abhishek, Gupta Pranav, Rai Niraj, Sultana Gazi Nurun Nahar, Chaubey Gyaneshwer

机构信息

Cytogenetics Laboratory, Department of Zoology, Banaras Hindu University, Varanasi, India.

Prosthodontics Unit, Faculty of Dental Sciences, Institute of Medical Sciences, Varanasi, India.

出版信息

Front Genet. 2020 Sep 25;11:564741. doi: 10.3389/fgene.2020.564741. eCollection 2020.

Abstract

Studies on host-pathogen interaction have identified human ACE2 as a host cell receptor responsible for mediating infection by coronavirus (COVID-19). Subsequent studies have shown striking difference of allele frequency among Europeans and Asians for a polymorphism rs2285666, present in . It has been revealed that the alternate allele (TT-plus strand or AA-minus strand) of rs2285666 elevate the expression level of this gene upto 50%, hence may play a significant role in SARS-CoV-2 susceptibility. Therefore, we have first looked the phylogenetic structure of rs2285666 derived haplotypes in worldwide populations and compared the spatial frequency of this particular allele with respect to the COVID-19 infection as well as case-fatality rate in India. For the first time, we ascertained a significant positive correlation for alternate allele (T or A) of rs2285666, with the lower infection as well as case-fatality rate among Indian populations. We trust that this information will be useful to understand the role of in COVID-19 susceptibility.

摘要

关于宿主-病原体相互作用的研究已确定人类血管紧张素转换酶2(ACE2)是负责介导冠状病毒(COVID-19)感染的宿主细胞受体。随后的研究表明,位于……的单核苷酸多态性rs2285666在欧洲人和亚洲人之间的等位基因频率存在显著差异。研究发现,rs2285666的替代等位基因(TT正链或AA负链)可使该基因的表达水平提高多达50%,因此可能在SARS-CoV-2易感性中发挥重要作用。因此,我们首先研究了rs2285666衍生单倍型在全球人群中的系统发育结构,并将该特定等位基因的空间频率与印度的COVID-19感染率以及病死率进行了比较。我们首次确定rs2285666的替代等位基因(T或A)与印度人群中较低的感染率和病死率之间存在显著正相关。我们相信,这些信息将有助于理解……在COVID-19易感性中的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc0c/7545580/231cd4350e82/fgene-11-564741-g001.jpg

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