Department of Biofunctional Chemistry, Division of Agricultural and Life Science, Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
Department of Instrumental Analysis, Advanced Science Research Center, Okayama University, Okayama, Japan.
Protein Sci. 2021 Feb;30(2):328-338. doi: 10.1002/pro.3984. Epub 2020 Nov 3.
Tetrathionate hydrolase (4THase) plays an important role in dissimilatory sulfur oxidation in the acidophilic iron- and sulfur-oxidizing bacterium Acidithiobacillus ferrooxidans. The structure of recombinant 4THase from A. ferrooxidans (Af-Tth) was determined by X-ray crystallography to a resolution of 1.95 Å. Af-Tth is a homodimer, and its monomer structure exhibits an eight-bladed β-propeller motif. Two insertion loops participate in dimerization, and one loop forms a cavity with the β-propeller region. We observed unexplained electron densities in this cavity of the substrate-soaked structure. The anomalous difference map generated using diffraction data collected at a wavelength of 1.9 Å indicated the presence of polymerized sulfur atoms. Asp325, a highly conserved residue among 4THases, was located near the polymerized sulfur atoms. 4THase activity was completely abolished in the site-specific Af-Tth D325N variant, suggesting that Asp325 plays a crucial role in the first step of tetrathionate hydrolysis. Considering that the Af-Tth reaction occurs only under acidic pH, Asp325 acts as an acid for the tetrathionate hydrolysis reaction. The polymerized sulfur atoms in the active site cavity may represent the intermediate product in the subsequent step.
连四硫酸盐水解酶(4THase)在嗜酸亚铁和硫氧化菌氧化亚铁硫杆菌的异化硫氧化中起着重要作用。通过 X 射线晶体学将来自氧化亚铁硫杆菌的重组 4THase(Af-Tth)的结构解析至 1.95Å 的分辨率。Af-Tth 是一个同源二聚体,其单体结构表现出八叶β-螺旋桨基序。两个插入环参与二聚化,一个环与β-螺旋桨区域形成一个空腔。我们在该底物浸泡结构的空腔中观察到无法解释的电子密度。使用在 1.9Å 波长下收集的衍射数据生成的异常差图表明存在聚合的硫原子。Asp325 是 4THase 中高度保守的残基,位于聚合的硫原子附近。在定点突变的 Af-Tth D325N 变体中,4THase 活性完全被消除,这表明 Asp325 在连四硫酸盐水解的第一步中起着至关重要的作用。考虑到 Af-Tth 反应仅在酸性 pH 条件下发生,Asp325 作为连四硫酸盐水解反应的酸。活性位点空腔中的聚合硫原子可能代表后续步骤的中间产物。