Department of Evolutionary Biology and Environmental Studies, University of Zürich, Zürich, Switzerland.
Swiss Institute of Bioinformatics, Lausanne, Switzerland.
PLoS Comput Biol. 2020 Oct 26;16(10):e1007727. doi: 10.1371/journal.pcbi.1007727. eCollection 2020 Oct.
Nongenetic phenotypic variation can either speed up or slow down adaptive evolution. We show that it can speed up evolution in environments where available carbon and energy sources change over time. To this end, we use an experimentally validated model of Escherichia coli growth on two alternative carbon sources, glucose and acetate. On the superior carbon source (glucose), all cells achieve high growth rates, while on the inferior carbon source (acetate) only a small fraction of the population manages to initiate growth. Consequently, populations experience a bottleneck when the environment changes from the superior to the inferior carbon source. Growth on the inferior carbon source depends on a circuit under the control of a transcription factor that is repressed in the presence of the superior carbon source. We show that noise in the expression of this transcription factor can increase the probability that cells start growing on the inferior carbon source. In doing so, it can decrease the severity of the bottleneck and increase mean population fitness whenever this fitness is low. A modest amount of noise can also enhance the fitness effects of a beneficial allele that increases the fraction of a population initiating growth on acetate. Additionally, noise can protect this allele from extinction, accelerate its spread, and increase its likelihood of going to fixation. Central to the adaptation-enhancing principle we identify is the ability of noise to mitigate population bottlenecks, particularly in environments that fluctuate periodically. Because such bottlenecks are frequent in fluctuating environments, and because periodically fluctuating environments themselves are common, this principle may apply to a broad range of environments and organisms.
非遗传表型变异既可以加速也可以减缓适应性进化。我们表明,它可以在可用的碳和能源随时间变化的环境中加速进化。为此,我们使用了一种经过实验验证的大肠杆菌在两种替代碳源(葡萄糖和醋酸盐)上生长的模型。在优越的碳源(葡萄糖)上,所有细胞都能实现高生长率,而在较差的碳源(醋酸盐)上,只有一小部分种群能够开始生长。因此,当环境从优越碳源变为较差碳源时,种群会经历瓶颈。在较差碳源上的生长依赖于一个受转录因子控制的回路,该转录因子在存在优越碳源时被抑制。我们表明,这种转录因子表达的噪声可以增加细胞开始在较差碳源上生长的概率。这样做可以降低瓶颈的严重程度,并在适应度较低时增加平均种群适应度。适度的噪声也可以增强有益等位基因的适应度效应,该等位基因增加了种群中开始在醋酸盐上生长的部分。此外,噪声可以保护该等位基因免于灭绝,加速其传播,并增加其固定的可能性。我们确定的增强适应原则的核心是噪声减轻种群瓶颈的能力,特别是在周期性波动的环境中。由于这种瓶颈在波动环境中很常见,而且周期性波动的环境本身也很常见,因此这个原则可能适用于广泛的环境和生物体。