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衰老图谱数据库:衰老生物学的多组学数据库。

Aging Atlas: a multi-omics database for aging biology.

出版信息

Nucleic Acids Res. 2021 Jan 8;49(D1):D825-D830. doi: 10.1093/nar/gkaa894.

Abstract

Organismal aging is driven by interconnected molecular changes encompassing internal and extracellular factors. Combinational analysis of high-throughput 'multi-omics' datasets (gathering information from genomics, epigenomics, transcriptomics, proteomics, metabolomics and pharmacogenomics), at either populational or single-cell levels, can provide a multi-dimensional, integrated profile of the heterogeneous aging process with unprecedented throughput and detail. These new strategies allow for the exploration of the molecular profile and regulatory status of gene expression during aging, and in turn, facilitate the development of new aging interventions. With a continually growing volume of valuable aging-related data, it is necessary to establish an open and integrated database to support a wide spectrum of aging research. The Aging Atlas database aims to provide a wide range of life science researchers with valuable resources that allow access to a large-scale of gene expression and regulation datasets created by various high-throughput omics technologies. The current implementation includes five modules: transcriptomics (RNA-seq), single-cell transcriptomics (scRNA-seq), epigenomics (ChIP-seq), proteomics (protein-protein interaction), and pharmacogenomics (geroprotective compounds). Aging Atlas provides user-friendly functionalities to explore age-related changes in gene expression, as well as raw data download services. Aging Atlas is freely available at https://bigd.big.ac.cn/aging/index.

摘要

生物体的衰老由内部和细胞外因素相互关联的分子变化所驱动。在群体或单细胞水平上对高通量“多组学”数据集(从基因组学、表观基因组学、转录组学、蛋白质组学、代谢组学和药物基因组学中收集信息)进行组合分析,可以提供具有前所未有的通量和细节的异质衰老过程的多维综合概况。这些新策略允许探索衰老过程中基因表达的分子特征和调控状态,并促进新的衰老干预措施的发展。随着与衰老相关的有价值数据量的不断增长,有必要建立一个开放和综合的数据库,以支持广泛的衰老研究。衰老图谱数据库旨在为广泛的生命科学研究人员提供有价值的资源,使他们能够访问由各种高通量组学技术创建的大规模基因表达和调控数据集。当前的实现包括五个模块:转录组学(RNA-seq)、单细胞转录组学(scRNA-seq)、表观基因组学(ChIP-seq)、蛋白质组学(蛋白质-蛋白质相互作用)和药物基因组学(抗衰老化合物)。衰老图谱提供了用户友好的功能,可用于探索与年龄相关的基因表达变化,以及提供原始数据下载服务。衰老图谱可在 https://bigd.big.ac.cn/aging/index 免费获取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a6e/7779027/28349e5b880e/gkaa894fig1.jpg

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