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从纽芬兰圆鳍鱼()中分离出的[具体内容缺失]的比较基因组学分析揭示了新的染色体组织。

Comparative Genomics Analysis of Isolated from Lumpfish () in Newfoundland Reveal Novel Chromosomal Organizations.

作者信息

Vasquez Ignacio, Cao Trung, Chakraborty Setu, Gnanagobal Hajarooba, O'Brien Nicole, Monk Jennifer, Boyce Danny, Westcott Jillian D, Santander Javier

机构信息

Microbial Pathogenesis and Vaccinology Laboratory, Department of Ocean Sciences, Memorial University, Logy Bay, NL A1C 5S7, Canada.

Department of Fisheries and Land Resources, Aquatic Animal Health Division, Government of Newfoundland and Labrador, St. John's, NL A1E 3Y5, Canada.

出版信息

Microorganisms. 2020 Oct 27;8(11):1666. doi: 10.3390/microorganisms8111666.

Abstract

is a Gram-negative marine pathogen causative agent of vibriosis in a wide range of hosts, including invertebrates and teleosts. Lumpfish (), a native fish of the North Atlantic Ocean, is utilized as cleaner fish to control sea lice () infestations in the Atlantic salmon () aquaculture industry. is one of the most frequent bacterial pathogens affecting lumpfish. Here, we described the phenotype and genomic characteristics of strain J360 isolated from infected cultured lumpfish in Newfoundland, Canada. Koch's postulates determined in naïve lumpfish showed lethal acute vibriosis in lumpfish. The J360 genome was shown to be composed of two chromosomes and two plasmids with a total genome size of 4.56 Mb with 44.85% G + C content. Phylogenetic and comparative analyses showed that J360 is closely related to strain VIB43, isolated in Scotland, with a 99.8% genome identity. Differences in the genomic organization were identified and associated with insertion sequence elements (ISs). Additionally, J360 does not possess a pJM1-like plasmid, typically present in virulent isolates from the Pacific Ocean, suggesting that acquisition of this extrachromosomal element and the virulence of J360 or other Atlantic isolates could increase.

摘要

是一种革兰氏阴性海洋病原体,可在包括无脊椎动物和硬骨鱼在内的多种宿主中引起弧菌病。圆鳍鱼()是北大西洋的本土鱼类,在大西洋鲑鱼()水产养殖业中被用作清洁鱼来控制海虱()的侵扰。是影响圆鳍鱼的最常见细菌病原体之一。在此,我们描述了从加拿大纽芬兰受感染的养殖圆鳍鱼中分离出的菌株J360的表型和基因组特征。在未感染的圆鳍鱼中进行的科赫法则实验表明,圆鳍鱼会出现致命的急性弧菌病。菌株J360的基因组由两条染色体和两个质粒组成,基因组总大小为4.56 Mb,G + C含量为44.85%。系统发育和比较分析表明,菌株J360与在苏格兰分离出的菌株VIB43密切相关,基因组同一性为99.8%。已鉴定出基因组组织的差异,并与插入序列元件(ISs)相关。此外,J360不具有通常存在于来自太平洋的有毒分离株中的pJM1样质粒,这表明获得这种染色体外元件可能会增加J360或其他大西洋分离株的毒力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac79/7716436/2c1604db5b58/microorganisms-08-01666-g001.jpg

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