Université de Lorraine & CNRS, LPCT, UMR 7019, F-54000 Nancy, France.
Departamento de Química and Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, 28049 Madrid, Spain.
J Chem Theory Comput. 2020 Nov 10;16(11):7061-7077. doi: 10.1021/acs.jctc.0c00919. Epub 2020 Oct 30.
The optical absorption spectrum of a perylene diimide (PDI) dye in acetonitrile solution is simulated using the recently developed ( , , 1215-1231) Ad-MD|VH method. This mixed quantum-classical (MQC) approach is based on an adiabatic (Ad) separation of soft(classical)/stiff(quantum) nuclear degrees of freedom and expresses the spectrum as a conformational average (over the soft coordinates) of vibronic spectra (for the stiff coordinates) obtained through the generalized vertical Hessian (VH) vibronic approach. The average is performed over snapshots extracted from classical molecular dynamics (MD) runs, performed with a specifically parameterized quantum-mechanically derived force field (QMD-FF). A comprehensive assessment of the reliability of different approaches, designed to reproduce spectral shapes of flexible molecules, is here presented. First, the differences in the sampled configurational space and their consequences on the prediction of the absorption spectra are evaluated by comparing the results obtained by means of the specific QMD-FF and of a general-purpose transferable FF with those of a reference MD (AIMD) in the gas phase, in both a purely classical scheme (ensemble average) and in the Ad-MD|VH framework. Next, classical ensemble average and MQC predictions are also obtained for the PDI dynamics in solution and compared with the results of a ″static″ approach, based on vibronic calculations carried out on a single optimized perylene diimide structure. In the classical ensemble average approach, the remarkably different samplings obtained with the two FFs lead to sizeable changes in both position and intensity of the predicted spectra, with the one computed along the QMD-FF trajectory closely matching its AIMD counterpart. Conversely, at the Ad-MD|VH level of theory, the different samplings deliver very similar vibronic spectra, indicating that the error found in the absorption spectra obtained with the general-purpose FF mainly concerns the stiff modes. In fact, it can be effectively corrected by the quadratic extrapolation performed by VH to locate the minima of the ground- and excited-state potential energy surfaces along such coordinates. Furthermore, in the perspective of studying the self-assembling process of PDI dyes and the vibronic spectra of large-size aggregates, the use of a molecule-specific QMD-FF also appears mandatory, considering the significant errors found in the GAFF trajectory in the flexible lateral chain populations, which dictate the supramolecular aggregation properties.
使用最近开发的(,, 1215-1231)Ad-MD|VH 方法模拟了二酰亚胺(PDI)染料在乙腈溶液中的光吸收光谱。这种混合量子经典(MQC)方法基于软(经典)/硬(量子)核自由度的绝热(Ad)分离,并通过广义垂直 Hessian(VH)振动方法表示为通过广义垂直 Hessian(VH)振动方法获得的振动光谱(对于硬坐标)的构象平均值(对于软坐标)。平均值是通过从经典分子动力学(MD)运行中提取的快照执行的,该快照是使用专门参数化的量子力学衍生力场(QMD-FF)执行的。这里提出了一种全面评估不同方法可靠性的方法,这些方法旨在重现柔性分子的光谱形状。首先,通过比较特定的 QMD-FF 和通用可转移 FF 与气相中参考 MD(AIMD)的结果,评估了采样构象空间的差异及其对吸收光谱预测的影响,这两种方法都是在纯经典方案(总体平均值)和 Ad-MD|VH 框架中进行的。接下来,还针对 PDI 在溶液中的动力学获得了经典总体平均值和 MQC 预测,并将其与基于单个优化二酰亚胺结构上进行的振动计算的“静态”方法的结果进行了比较。在经典总体平均值方法中,两种 FF 获得的采样非常不同,导致预测光谱的位置和强度都发生了相当大的变化,其中沿着 QMD-FF 轨迹计算的光谱与 AIMD 对应物非常匹配。相反,在 Ad-MD|VH 理论水平上,不同的采样提供了非常相似的振动光谱,这表明在使用通用 FF 获得的吸收光谱中发现的误差主要涉及硬模式。实际上,可以通过 VH 进行二次外推有效地校正,以找到沿这些坐标的基态和激发态势能表面的最小值。此外,从研究 PDI 染料的自组装过程和大尺寸聚集体的振动光谱的角度来看,考虑到在柔性侧链群体中发现的 GAFF 轨迹中的显着误差,使用分子特定的 QMD-FF 也是必需的,这些误差决定了超分子聚集性质。