Department of Life Science, School of Earth, Biological and Environmental Sciences, Central University of South Bihar, Gaya, 824236, India.
Department of Bioinformatics, School of Earth, Biological and Environmental Sciences, Central University of South Bihar, Gaya, 824236, India.
World J Microbiol Biotechnol. 2020 Oct 31;36(12):178. doi: 10.1007/s11274-020-02955-7.
Siderophores are metal chelating secondary metabolites secreted by almost all organisms. Beside iron starvation, the ability to produce siderophores depends upon several other factors. Chemical structure of siderophore is very complex with vast structural diversity, thus the principle challenge involves its detection, quantification, purification and characterisation. Metal chelation is its most fascinating attribute. This metal chelation property is now forming the basis of its application as molecular markers, siderotyping tool for taxonomic clarification, biosensors and bioremediation agents. This has led researchers to develop and continuously modify previous techniques in order to provide accurate and reproducible methods of studying siderophores. Knowledge obtained via computational approaches provides a new horizon in the field of siderophore biosynthetic gene clusters and their interaction with various proteins/peptides. This review illustrates various techniques, bioinformatics tools and databases employed in siderophores' studies, the principle of analytical methods and their recent applications.
铁载体是几乎所有生物分泌的金属螯合次生代谢物。除了缺铁饥饿之外,产生铁载体的能力还取决于其他几个因素。铁载体的化学结构非常复杂,具有广泛的结构多样性,因此主要的挑战涉及到它的检测、定量、纯化和表征。金属螯合是其最迷人的特性。这种金属螯合特性现在正成为其作为分子标记物、分类学澄清的铁载体分型工具、生物传感器和生物修复剂应用的基础。这促使研究人员开发并不断改进以前的技术,以便提供研究铁载体的准确和可重复的方法。通过计算方法获得的知识为铁载体生物合成基因簇及其与各种蛋白质/肽相互作用的领域提供了新的前景。本文综述了铁载体研究中使用的各种技术、生物信息学工具和数据库、分析方法的原理及其最新应用。