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厄瓜多尔婴儿沙门氏菌的基因组流行病学:从家禽养殖场到人类感染

Genomic Epidemiology of Infantis in Ecuador: From Poultry Farms to Human Infections.

作者信息

Mejía Lorena, Medina José Luis, Bayas Rosa, Salazar Carolina Satan, Villavicencio Fernando, Zapata Sonia, Matheu Jorge, Wagenaar Jaap A, González-Candelas Fernando, Vinueza-Burgos Christian

机构信息

Instituto de Microbiología, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito, Quito, Ecuador.

Institute for Integrative Systems Biology, University of Valencia, Valencia, Spain.

出版信息

Front Vet Sci. 2020 Sep 29;7:547891. doi: 10.3389/fvets.2020.547891. eCollection 2020.

Abstract

is one of the most important foodborne pathogens around the world. In the last years, . serovar Infantis has become an important emerging pathogen in many countries, often as multidrug resistant clones. To understand the importance of in the broiler industry in Ecuador, we performed a study based on phenotypic and WGS data of isolates from poultry farms, chicken carcasses and humans. We showed a high prevalence of in poultry farms (41.4%) and chicken carcasses (55.5%), but a low prevalence (1.98%) in human samples. . Infantis was shown to be the most prevalent serovar with a 98.2, 97.8, and 50% in farms, foods, and humans, respectively, presenting multidrug resistant patterns. All sequenced . Infantis isolates belonged to ST32. For the first time, a pESI-related megaplasmid was identified in Ecuadorian samples. This plasmid contains genes of antimicrobial resistance, virulence factors, and environmental stress tolerance. Genomic analysis showed a low divergence of . Infantis strains in the three analyzed components. The results from this study provide important information about genetic elements that may help understand the molecular epidemiology of . Infantis in Ecuador.

摘要

是全球最重要的食源性病原体之一。在过去几年中,婴儿亚种已成为许多国家重要的新兴病原体,通常为多重耐药克隆株。为了解其在厄瓜多尔肉鸡产业中的重要性,我们基于来自家禽养殖场、鸡胴体和人类的分离株的表型和全基因组测序(WGS)数据进行了一项研究。我们发现家禽养殖场(41.4%)和鸡胴体(55.5%)中的感染率很高,但人类样本中的感染率较低(1.98%)。婴儿亚种被证明是最普遍的血清型,在养殖场、食品和人类中的占比分别为98.2%、97.8%和50%,呈现出多重耐药模式。所有测序的婴儿亚种分离株均属于ST32。首次在厄瓜多尔样本中鉴定出与pESI相关的大质粒。该质粒包含抗菌抗性基因、毒力因子和环境应激耐受性基因。基因组分析显示婴儿亚种菌株在三个分析组分中的差异较小。本研究结果提供了有关遗传元件的重要信息,可能有助于了解厄瓜多尔婴儿亚种的分子流行病学。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/999d/7550756/5d8e39daa365/fvets-07-547891-g0001.jpg

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