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生物传感器设计的计算方法研究进展。

Recent advances in computational methods for biosensor design.

机构信息

Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran.

Department of Chemistry, Islamic Azad University, Mashhad Branch, Mashhad, Iran.

出版信息

Biotechnol Bioeng. 2021 Feb;118(2):555-578. doi: 10.1002/bit.27618. Epub 2020 Nov 17.

Abstract

Biosensors are analytical tools with a great application in healthcare, food quality control, and environmental monitoring. They are of considerable interest to be designed by using cost-effective and efficient approaches. Designing biosensors with improved functionality or application in new target detection has been converted to a fast-growing field of biomedicine and biotechnology branches. Experimental efforts have led to valuable successes in the field of biosensor design; however, some deficiencies restrict their utilization for this purpose. Computational design of biosensors is introduced as a promising key to eliminate the gap. A set of reliable structure prediction of the biosensor segments, their stability, and accurate descriptors of molecular interactions are required to computationally design biosensors. In this review, we provide a comprehensive insight into the progress of computational methods to guide the design and development of biosensors, including molecular dynamics simulation, quantum mechanics calculations, molecular docking, virtual screening, and a combination of them as the hybrid methodologies. By relying on the recent advances in the computational methods, an opportunity emerged for them to be complementary or an alternative to the experimental methods in the field of biosensor design.

摘要

生物传感器是具有广泛应用的分析工具,在医疗保健、食品质量控制和环境监测领域具有重要意义。设计具有成本效益和高效率的生物传感器是一个备受关注的领域。通过改进功能或应用于新的目标检测,生物传感器设计已成为生物医学和生物技术领域快速发展的领域。实验努力在生物传感器设计领域取得了有价值的成功;然而,一些缺陷限制了它们在这方面的应用。生物传感器的计算设计被引入为消除这一差距的有希望的关键。为了进行生物传感器的计算设计,需要一组可靠的生物传感器片段的结构预测、它们的稳定性和分子相互作用的准确描述符。在这篇综述中,我们全面深入地了解了指导生物传感器设计和开发的计算方法的进展,包括分子动力学模拟、量子力学计算、分子对接、虚拟筛选以及它们作为混合方法的结合。依靠计算方法的最新进展,它们有机会在生物传感器设计领域与实验方法互补或替代。

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