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基于加权 [Formula: see text]-最近已知邻居和网络一致性投影的 miRNA-疾病关联预测。

Prediction of miRNA-disease associations based on Weighted [Formula: see text]-Nearest known neighbors and network consistency projection.

机构信息

Department of Electricity and Energy, Bozkır Vocational School, Selcuk University, Konya, Turkey.

Department of Biomedical Engineering, Faculty of Technology, Selcuk University, Konya, Turkey.

出版信息

J Bioinform Comput Biol. 2021 Feb;19(1):2050041. doi: 10.1142/S0219720020500419. Epub 2020 Nov 5.

Abstract

MicroRNAs (miRNA) are a type of non-coding RNA molecules that are effective on the formation and the progression of many different diseases. Various researches have reported that miRNAs play a major role in the prevention, diagnosis, and treatment of complex human diseases. In recent years, researchers have made a tremendous effort to find the potential relationships between miRNAs and diseases. Since the experimental techniques used to find that new miRNA-disease relationships are time-consuming and expensive, many computational techniques have been developed. In this study, Weighted [Formula: see text]-Nearest Known Neighbors and Network Consistency Projection techniques were suggested to predict new miRNA-disease relationships using various types of knowledge such as known miRNA-disease relationships, functional similarity of miRNA, and disease semantic similarity. An average AUC of 0.9037 and 0.9168 were calculated in our method by 5-fold and leave-one-out cross validation, respectively. Case studies of breast, lung, and colon neoplasms were applied to prove the performance of our proposed technique, and the results confirmed the predictive reliability of this method. Therefore, reported experimental results have shown that our proposed method can be used as a reliable computational model to reveal potential relationships between miRNAs and diseases.

摘要

微小 RNA(miRNA)是一种非编码 RNA 分子,对许多不同疾病的发生和发展具有重要作用。许多研究表明,miRNA 在复杂人类疾病的预防、诊断和治疗中发挥着重要作用。近年来,研究人员一直在努力寻找 miRNA 与疾病之间的潜在关系。由于用于发现新 miRNA-疾病关系的实验技术耗时且昂贵,因此开发了许多计算技术。在这项研究中,提出了加权 [公式:见文本]-最近邻居和网络一致性预测技术,以使用已知的 miRNA-疾病关系、miRNA 的功能相似性和疾病语义相似性等各种类型的知识来预测新的 miRNA-疾病关系。通过 5 折交叉验证和留一法交叉验证,我们的方法分别计算出平均 AUC 为 0.9037 和 0.9168。应用乳腺癌、肺癌和结肠癌肿瘤的案例研究证明了我们提出的技术的性能,结果证实了该方法的预测可靠性。因此,报告的实验结果表明,我们提出的方法可以作为一种可靠的计算模型,揭示 miRNA 与疾病之间的潜在关系。

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