• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于最小化矩阵核范数预测人类微小RNA与疾病的关联。

Predicting human miRNA disease association with minimize matrix nuclear norm.

作者信息

Toprak Ahmet

机构信息

Department of Electricity and Energy, Selcuk University, Konya, Turkey.

出版信息

Sci Rep. 2024 Dec 28;14(1):30815. doi: 10.1038/s41598-024-81213-4.

DOI:10.1038/s41598-024-81213-4
PMID:39730483
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11680809/
Abstract

microRNAs (miRNAs) are non-coding RNA molecules that influence the development and progression of many diseases. Research have documented that miRNAs have a significant role in the prevention, diagnosis, and treatment of complex human diseases. Recently, scientists have devoted extensive resources to attempting to find the connections between miRNAs and diseases. Since the experimental methods used to discover that new miRNA-disease associations are time-consuming and expensive, many computational methods have been developed. In this research, a novel computational method based on matrix decomposition was proposed to predict new associations between miRNAs and diseases. Furthermore, the nuclear norm minimization method was employed to acquire breast cancer-associated miRNAs. We then evaluated the effectiveness of our method by utilizing two different cross-validation techniques and the results were compared to seven different methods. Moreover, a case study on breast cancer further validated our technique, confirming its predictive accuracy. These experimental results demonstrate that our method is a reliable computational model for uncovering potential miRNA-disease relationships.

摘要

微小RNA(miRNA)是非编码RNA分子,影响许多疾病的发生发展。研究表明,miRNA在复杂人类疾病的预防、诊断和治疗中发挥着重要作用。近年来,科学家投入大量资源试图寻找miRNA与疾病之间的联系。由于用于发现新的miRNA-疾病关联的实验方法耗时且昂贵,因此已开发出许多计算方法。本研究提出了一种基于矩阵分解的新型计算方法来预测miRNA与疾病之间的新关联。此外,采用核范数最小化方法获取与乳腺癌相关的miRNA。然后,我们利用两种不同的交叉验证技术评估了该方法的有效性,并将结果与七种不同方法进行了比较。此外,一项关于乳腺癌的案例研究进一步验证了我们的技术,证实了其预测准确性。这些实验结果表明,我们的方法是一种可靠的计算模型,可用于揭示潜在的miRNA-疾病关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2e3/11680809/a70c0597b05c/41598_2024_81213_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2e3/11680809/3ba7a9005a84/41598_2024_81213_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2e3/11680809/7f251fa8f24d/41598_2024_81213_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2e3/11680809/a70c0597b05c/41598_2024_81213_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2e3/11680809/3ba7a9005a84/41598_2024_81213_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2e3/11680809/7f251fa8f24d/41598_2024_81213_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2e3/11680809/a70c0597b05c/41598_2024_81213_Fig3_HTML.jpg

相似文献

1
Predicting human miRNA disease association with minimize matrix nuclear norm.基于最小化矩阵核范数预测人类微小RNA与疾病的关联。
Sci Rep. 2024 Dec 28;14(1):30815. doi: 10.1038/s41598-024-81213-4.
2
MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction.MDHGI:用于 miRNA 疾病关联预测的矩阵分解和异质图推理。
PLoS Comput Biol. 2018 Aug 24;14(8):e1006418. doi: 10.1371/journal.pcbi.1006418. eCollection 2018 Aug.
3
MCLPMDA: A novel method for miRNA-disease association prediction based on matrix completion and label propagation.MCLPMDA:一种基于矩阵补全和标签传播的 miRNA-疾病关联预测新方法。
J Cell Mol Med. 2019 Feb;23(2):1427-1438. doi: 10.1111/jcmm.14048. Epub 2018 Nov 29.
4
EMCMDA: predicting miRNA-disease associations via efficient matrix completion.EMCMDA:通过高效矩阵补全预测 miRNA-疾病关联
Sci Rep. 2024 Jun 4;14(1):12761. doi: 10.1038/s41598-024-63582-y.
5
MDAlmc: A Novel Low-rank Matrix Completion Model for MiRNADisease Association Prediction by Integrating Similarities among MiRNAs and Diseases.MDAlmc:一种新的基于低秩矩阵补全的 miRNA 疾病关联预测模型,通过整合 miRNA 和疾病之间的相似性。
Curr Gene Ther. 2023;23(4):316-327. doi: 10.2174/1566523223666230419101405.
6
Prediction of miRNA-disease associations based on Weighted [Formula: see text]-Nearest known neighbors and network consistency projection.基于加权 [Formula: see text]-最近已知邻居和网络一致性投影的 miRNA-疾病关联预测。
J Bioinform Comput Biol. 2021 Feb;19(1):2050041. doi: 10.1142/S0219720020500419. Epub 2020 Nov 5.
7
FCGCNMDA: predicting miRNA-disease associations by applying fully connected graph convolutional networks.FCGCNMDA:通过应用全连接图卷积网络来预测 miRNA-疾病关联。
Mol Genet Genomics. 2020 Sep;295(5):1197-1209. doi: 10.1007/s00438-020-01693-7. Epub 2020 Jun 4.
8
A Novel Neighborhood-Based Computational Model for Potential MiRNA-Disease Association Prediction.一种基于邻域的新型计算模型用于潜在miRNA-疾病关联预测
Comput Math Methods Med. 2019 Jan 17;2019:5145646. doi: 10.1155/2019/5145646. eCollection 2019.
9
Prediction of Potential MicroRNA-Disease Association Using Kernelized Bayesian Matrix Factorization.基于核化贝叶斯矩阵分解的潜在 miRNA-疾病关联预测。
Interdiscip Sci. 2021 Dec;13(4):595-602. doi: 10.1007/s12539-021-00469-w. Epub 2021 Aug 9.
10
Network Consistency Projection for Human miRNA-Disease Associations Inference.用于人类miRNA-疾病关联推断的网络一致性投影
Sci Rep. 2016 Oct 25;6:36054. doi: 10.1038/srep36054.

引用本文的文献

1
DeepWalk-Based Graph Embeddings for miRNA-Disease Association Prediction Using Deep Neural Network.基于深度游走的图嵌入用于使用深度神经网络进行miRNA-疾病关联预测
Biomedicines. 2025 Feb 20;13(3):536. doi: 10.3390/biomedicines13030536.

本文引用的文献

1
SCPLPA: An miRNA-disease association prediction model based on spatial consistency projection and label propagation algorithm.SCPLPA:基于空间一致性投影和标签传播算法的 miRNA-疾病关联预测模型。
J Cell Mol Med. 2024 May;28(9):e18345. doi: 10.1111/jcmm.18345.
2
Recent developments in targeting breast cancer stem cells (BCSCs): a descriptive review of therapeutic strategies and emerging therapies.靶向乳腺癌干细胞(BCSCs)的最新进展:治疗策略和新兴疗法的描述性综述。
Med Oncol. 2024 Apr 9;41(5):112. doi: 10.1007/s12032-024-02347-z.
3
NMGMDA: a computational model for predicting potential microbe-drug associations based on minimize matrix nuclear norm and graph attention network.
NMGMDA:一种基于最小矩阵核范数和图注意网络的预测潜在微生物-药物关联的计算模型。
Sci Rep. 2024 Jan 5;14(1):650. doi: 10.1038/s41598-023-50793-y.
4
HMDD v4.0: a database for experimentally supported human microRNA-disease associations.HMDD v4.0:一个实验支持的人类 microRNA-疾病关联数据库。
Nucleic Acids Res. 2024 Jan 5;52(D1):D1327-D1332. doi: 10.1093/nar/gkad717.
5
miRNAs: Potential as Biomarkers and Therapeutic Targets for Cancer.miRNAs:癌症的潜在生物标志物和治疗靶点。
Genes (Basel). 2023 Jun 29;14(7):1375. doi: 10.3390/genes14071375.
6
MNNMDA: Predicting human microbe-disease association via a method to minimize matrix nuclear norm.MNNMDA:通过一种最小化矩阵核范数的方法预测人类微生物-疾病关联。
Comput Struct Biotechnol J. 2023 Jan 2;21:1414-1423. doi: 10.1016/j.csbj.2022.12.053. eCollection 2023.
7
Aberrant promoter hypermethylation of miR-335 and miR-145 is involved in breast cancer PD-L1 overexpression.miR-335 和 miR-145 的启动子异常高甲基化参与乳腺癌 PD-L1 的过表达。
Sci Rep. 2023 Jan 18;13(1):1003. doi: 10.1038/s41598-023-27415-8.
8
Updated review of advances in microRNAs and complex diseases: towards systematic evaluation of computational models.微 RNA 与复杂疾病研究进展的更新综述:迈向计算模型的系统评估
Brief Bioinform. 2022 Nov 19;23(6). doi: 10.1093/bib/bbac407.
9
From Molecular Mechanisms to Therapeutics: Understanding MicroRNA-21 in Cancer.从分子机制到治疗:了解癌症中的 microRNA-21。
Cells. 2022 Sep 7;11(18):2791. doi: 10.3390/cells11182791.
10
Updated review of advances in microRNAs and complex diseases: experimental results, databases, webservers and data fusion.微小 RNA 与复杂疾病研究进展的最新综述:实验结果、数据库、网络服务器及数据融合。
Brief Bioinform. 2022 Nov 19;23(6). doi: 10.1093/bib/bbac397.