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本文引用的文献

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"Catch and Release": A Variation of the Archetypal Nucleotidyl Transfer Reaction.“捕获与释放”:原型核苷酸转移反应的一种变体
ACS Catal. 2020 Mar 20;10(6):3548-3555. doi: 10.1021/acscatal.9b05201. Epub 2020 Feb 18.
2
Structural basis for antibiotic action of the B antivitamin 2'-methoxy-thiamine.B 族抗维生素 2'-甲氧基硫胺素的抗生素作用的结构基础。
Nat Chem Biol. 2020 Nov;16(11):1237-1245. doi: 10.1038/s41589-020-0628-4. Epub 2020 Aug 24.
3
Mechanism of proton transfer in class A β-lactamase catalysis and inhibition by avibactam.A 类β-内酰胺酶催化质子转移机制及抑制剂阿维巴坦的抑制作用。
Proc Natl Acad Sci U S A. 2020 Mar 17;117(11):5818-5825. doi: 10.1073/pnas.1922203117. Epub 2020 Mar 2.
4
Unraveling the structural and chemical features of biological short hydrogen bonds.解析生物短氢键的结构和化学特征。
Chem Sci. 2019 Jul 1;10(33):7734-7745. doi: 10.1039/c9sc01496a. eCollection 2019 Sep 7.
5
Low-barrier hydrogen bonds in enzyme cooperativity.酶协同作用中的低势氢键。
Nature. 2019 Sep;573(7775):609-613. doi: 10.1038/s41586-019-1581-9. Epub 2019 Sep 18.
6
The rise of neutron cryo-crystallography.中子低温晶体学的兴起。
Acta Crystallogr D Struct Biol. 2018 Aug 1;74(Pt 8):792-799. doi: 10.1107/S205979831800640X. Epub 2018 Jul 24.
7
Structural Coupling Throughout the Active Site Hydrogen Bond Networks of Ketosteroid Isomerase and Photoactive Yellow Protein.结构偶联贯穿于甾酮异构酶和光致变色黄色蛋白活性部位氢键网络中。
J Am Chem Soc. 2018 Aug 8;140(31):9827-9843. doi: 10.1021/jacs.8b01596. Epub 2018 Jul 27.
8
Direct evidence of a low barrier hydrogen bond in the catalytic triad of a Serine protease.丝氨酸蛋白酶催化三联体中低势氢键的直接证据。
Sci Rep. 2018 Jul 4;8(1):10078. doi: 10.1038/s41598-018-28441-7.
9
Hydrogen Bonds: Simple after All?氢键:终究很简单?
Biochemistry. 2018 Jun 19;57(24):3338-3352. doi: 10.1021/acs.biochem.8b00217. Epub 2018 May 16.
10
A low-barrier hydrogen bond mediates antibiotic resistance in a noncanonical catalytic triad.低势氢键介导非典型催化三联体中的抗生素耐药性。
Sci Adv. 2018 Apr 4;4(4):eaas8667. doi: 10.1126/sciadv.aas8667. eCollection 2018 Apr.

蛋白质结构与功能中的低势垒氢键。

Low barrier hydrogen bonds in protein structure and function.

机构信息

Department of Molecular Medicine, University of South Florida Morsani College of Medicine, 12901 Bruce B. Downs Blvd, MDC 3522, Tampa, Florida 33612, United States.

Department of Molecular Medicine, University of South Florida Morsani College of Medicine, 12901 Bruce B. Downs Blvd, MDC 3522, Tampa, Florida 33612, United States.

出版信息

Biochim Biophys Acta Proteins Proteom. 2021 Jan;1869(1):140557. doi: 10.1016/j.bbapap.2020.140557. Epub 2020 Oct 23.

DOI:10.1016/j.bbapap.2020.140557
PMID:33148530
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7736181/
Abstract

Low-barrier hydrogen bonds (LBHBs) are a special type of short hydrogen bond (HB) that is characterized by the equal sharing of a hydrogen atom. The existence and catalytic role of LBHBs in proteins has been intensely contested. Advancements in X-ray and neutron diffraction methods has revealed delocalized hydrogen atoms involved in potential LBHBs in a number of proteins, while also demonstrating that short HBs are not necessarily LBHBs. More importantly, a series of experiments on ketosteroid isomerase (KSI) have suggested that LBHBs are significantly stronger than standard HBs in the protein microenvironment in terms of enthalpy, but not free energy. The discrepancy between the enthalpy and free energy of LBHBs offers clues to the challenges, and potential solutions, of the LBHB debate, where the unique strength of LBHBs plays a special role in the kinetic processes of enzyme function and structure, together with other molecular forces in a pre-organized environment.

摘要

低能垒氢键 (LBHBs) 是一种特殊类型的短氢键 (HB),其特征在于氢原子的平均共享。LBHBs 在蛋白质中的存在和催化作用一直存在争议。X 射线和中子衍射方法的进步揭示了许多蛋白质中涉及潜在 LBHBs 的离域氢原子,同时也表明短 HB 不一定是 LBHBs。更重要的是,一系列关于酮固醇异构酶 (KSI) 的实验表明,在蛋白质微环境中,LBHBs 在焓方面比标准 HB 强得多,但在自由能方面则不然。LBHBs 的焓和自由能之间的差异为 LBHB 争论提供了线索,LBHBs 的独特强度在酶功能和结构的动力学过程中以及在预组织环境中的其他分子力中发挥着特殊作用。