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氢键:终究很简单?

Hydrogen Bonds: Simple after All?

作者信息

Herschlag Daniel, Pinney Margaux M

出版信息

Biochemistry. 2018 Jun 19;57(24):3338-3352. doi: 10.1021/acs.biochem.8b00217. Epub 2018 May 16.

Abstract

Hydrogen bonds play integral roles in biological structure, function, and conformational dynamics and are fundamental to life as it has evolved on Earth. However, our understanding of these fundamental and ubiquitous interactions has seemed fractured and incomplete, and it has been difficult to extract generalities and principles about hydrogen bonds despite thousands of papers published on this topic, perhaps in part because of the expanse of this subject and the density of studies. Fortunately, recent hydrogen bond proposals, discussions, and debates have stimulated new tests and models and have led to a remarkably simple picture of the structure of hydrogen bonds. This knowledge also provides clarity concerning hydrogen bond energetics, limiting and simplifying the factors that need be considered. Herein we recount the advances that have led to this simpler view of hydrogen bond structure, dynamics, and energetics. A quantitative predictive model for hydrogen bond length can now be broadly and deeply applied to evaluate current proposals and to uncover structural features of proteins, their conformational restraints, and their correlated motions. In contrast, a quantitative energetic description of molecular recognition and catalysis by proteins remains an important ongoing challenge, although our improved understanding of hydrogen bonds may aid in testing predictions from current and future models. We close by codifying our current state of understanding into five "Rules for Hydrogen Bonding" that may provide a foundation for understanding and teaching about these vital interactions and for building toward a deeper understanding of hydrogen bond energetics.

摘要

氢键在生物结构、功能和构象动力学中发挥着不可或缺的作用,对于地球上生命的演化至关重要。然而,我们对这些基本且普遍存在的相互作用的理解似乎是零散且不完整的。尽管关于这个主题已经发表了数千篇论文,但要提炼出关于氢键的一般性规律和原理却很困难,部分原因可能是这个主题范围广泛且研究密集。幸运的是,最近关于氢键的提议、讨论和争论激发了新的测试和模型,并得出了一个关于氢键结构的非常简单的图景。这些知识也为氢键能量学提供了清晰的认识,限制并简化了需要考虑的因素。在此,我们叙述了促成对氢键结构、动力学和能量学有更简单看法的进展。现在,一个关于氢键长度的定量预测模型可以广泛而深入地应用于评估当前的提议,并揭示蛋白质的结构特征、它们的构象限制以及相关运动。相比之下,对蛋白质分子识别和催化的定量能量描述仍然是一个重要的持续挑战,尽管我们对氢键的更好理解可能有助于检验当前和未来模型的预测。我们通过将我们目前的理解状态编纂为五条“氢键规则”来结束本文,这些规则可能为理解和教授这些重要相互作用以及更深入理解氢键能量学提供基础。

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